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@ -1,17 +1,21 @@
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# without means enabled
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|
%bcond_with doc
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|
%bcond_without tests
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|
# Set to pre-release version suffix if building pre-release, else %%{nil}
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|
|
%global rcver %{nil}
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%if 0%{?fedora} >= 33 || 0%{?rhel} >= 9
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|
%global blaslib flexiblas
|
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|
|
%global blasvar %{nil}
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|
|
%else
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|
|
%global blaslib openblas
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|
|
%global blasvar p
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|
|
%endif
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|
|
Summary: Scientific Tools for Python
|
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|
|
Name: scipy
|
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|
|
Version: 1.5.4
|
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|
Release: 5%{?dist}
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|
Version: 1.6.2
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Release: 8%{?dist}
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# BSD -- whole package except:
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# Boost -- scipy/special/cephes/scipy_iv.c
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@ -20,30 +24,19 @@ License: BSD and Boost and Public Domain
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Url: http://www.scipy.org/scipylib/index.html
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|
Source0: https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.gz
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# Exclude i686 arch. Due to a modularity issue it's being added to the
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# x86_64 compose of CRB, but we don't want to ship it at all.
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# See: https://projects.engineering.redhat.com/browse/RCM-72605
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ExcludeArch: i686
|
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|
# https://github.com/scipy/scipy/pull/12899
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Patch0: skip-certain-tests-on-32-bit-arches.patch
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|
BuildRequires: fftw-devel, suitesparse-devel
|
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|
BuildRequires: %{blaslib}-devel
|
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|
BuildRequires: gcc-gfortran, swig, gcc-c++
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|
BuildRequires: qhull-devel
|
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|
|
BuildRequires: /usr/bin/pathfix.py
|
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|
|
BuildRequires: python%{python3_pkgversion}-pybind11-devel
|
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|
|
BuildRequires: python%{python3_pkgversion}-pybind11 >= 2.4.0
|
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|
|
BuildRequires: python%{python3_pkgversion}-devel
|
|
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|
|
BuildRequires: python%{python3_pkgversion}-rpm-macros
|
|
|
|
|
BuildRequires: python%{python3_pkgversion}-numpy
|
|
|
|
|
BuildRequires: python%{python3_pkgversion}-numpy-f2py
|
|
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|
|
BuildRequires: python%{python3_pkgversion}-setuptools
|
|
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|
|
BuildRequires: python%{python3_pkgversion}-Cython
|
|
|
|
|
%if %{with tests}
|
|
|
|
|
BuildRequires: python%{python3_pkgversion}-pytest
|
|
|
|
|
%endif
|
|
|
|
|
BuildRequires: pybind11-devel
|
|
|
|
|
BuildRequires: python3-pybind11 >= 2.4.0
|
|
|
|
|
BuildRequires: python3-numpy, python3-devel, python3-numpy-f2py
|
|
|
|
|
BuildRequires: python3-setuptools
|
|
|
|
|
BuildRequires: python3-Cython
|
|
|
|
|
BuildRequires: python3-pytest
|
|
|
|
|
BuildRequires: python3-pytest-timeout
|
|
|
|
|
|
|
|
|
|
%if %{with doc}
|
|
|
|
|
BuildRequires: python3-sphinx
|
|
|
|
|
@ -64,17 +57,17 @@ leading scientists and engineers.}
|
|
|
|
|
|
|
|
|
|
%description %_description
|
|
|
|
|
|
|
|
|
|
%package -n python%{python3_pkgversion}-scipy
|
|
|
|
|
%package -n python3-scipy
|
|
|
|
|
Summary: Scientific Tools for Python
|
|
|
|
|
Requires: python%{python3_pkgversion}-numpy, python%{python3_pkgversion}-numpy-f2py
|
|
|
|
|
%{?python_provide:%python_provide python%{python3_pkgversion}-scipy}
|
|
|
|
|
%description -n python%{python3_pkgversion}-scipy %_description
|
|
|
|
|
Requires: python3-numpy, python3-f2py
|
|
|
|
|
%{?python_provide:%python_provide python3-scipy}
|
|
|
|
|
%description -n python3-scipy %_description
|
|
|
|
|
|
|
|
|
|
%if %{with doc}
|
|
|
|
|
%package -n python%{python3_pkgversion}-scipy-doc
|
|
|
|
|
%package -n python3-scipy-doc
|
|
|
|
|
Summary: Scientific Tools for Python - documentation
|
|
|
|
|
Requires: python%{python3_pkgversion}-scipy = %{version}-%{release}
|
|
|
|
|
%description -n python%{python3_pkgversion}-scipy-doc
|
|
|
|
|
Requires: python3-scipy = %{version}-%{release}
|
|
|
|
|
%description -n python3-scipy-doc
|
|
|
|
|
HTML documentation for Scipy
|
|
|
|
|
%endif
|
|
|
|
|
|
|
|
|
|
@ -110,8 +103,12 @@ rm $(grep -rl '/\* Generated by Cython') PKG-INFO
|
|
|
|
|
for PY in %{python3_version}; do
|
|
|
|
|
# Adding -fallow-argument-mismatch workaround for https://github.com/scipy/scipy/issues/11611
|
|
|
|
|
env CFLAGS="$RPM_OPT_FLAGS -lm" \
|
|
|
|
|
FFLAGS="$RPM_OPT_FLAGS -fPIC -cpp" \
|
|
|
|
|
LDFLAGS="$RPM_LD_FLAGS -shared" \
|
|
|
|
|
%if 0%{?fedora} >= 32 || 0%{?rhel} >= 9
|
|
|
|
|
FFLAGS="$RPM_OPT_FLAGS -fPIC -fallow-argument-mismatch" \
|
|
|
|
|
%else
|
|
|
|
|
FFLAGS="$RPM_OPT_FLAGS -fPIC" \
|
|
|
|
|
%endif
|
|
|
|
|
LDFLAGS="%{__global_ldflags}" \
|
|
|
|
|
%{_bindir}/python$PY setup.py config_fc \
|
|
|
|
|
--fcompiler=gnu95 --noarch \
|
|
|
|
|
build
|
|
|
|
|
@ -129,13 +126,15 @@ done
|
|
|
|
|
%install
|
|
|
|
|
%py3_install
|
|
|
|
|
# Some files got ambiguous python shebangs, we fix them after everything else is done
|
|
|
|
|
pathfix%{python3_version}.py -pni "%{__python3} %{py3_shbang_opts}" %{buildroot}%{python3_sitearch}
|
|
|
|
|
pathfix.py -pni "%{__python3} %{py3_shbang_opts}" %{buildroot}%{python3_sitearch}
|
|
|
|
|
|
|
|
|
|
%if %{with tests}
|
|
|
|
|
%check
|
|
|
|
|
# check against the reference BLAS/LAPACK
|
|
|
|
|
export FLEXIBLAS=netlib
|
|
|
|
|
|
|
|
|
|
# default test timeout
|
|
|
|
|
TIMEOUT=500
|
|
|
|
|
|
|
|
|
|
%ifarch s390x
|
|
|
|
|
# skip failing tests on s390x for now
|
|
|
|
|
export PYTEST_ADDOPTS="-k '\
|
|
|
|
|
@ -150,72 +149,78 @@ export PYTEST_ADDOPTS="-k '\
|
|
|
|
|
not test_kde_integer_input and \
|
|
|
|
|
not test_pdf_logpdf and \
|
|
|
|
|
not test_pdf_logpdf_weighted'"
|
|
|
|
|
%endif
|
|
|
|
|
|
|
|
|
|
# Those tests fail on koji/brew for ppc64le but pass
|
|
|
|
|
# locally for that architecture
|
|
|
|
|
%ifarch ppc64le
|
|
|
|
|
export PYTEST_ADDOPTS="-k '\
|
|
|
|
|
not TestFFTConvolve and \
|
|
|
|
|
not TestDoubleFFT and \
|
|
|
|
|
not TestSingleFFT and \
|
|
|
|
|
not TestDoubleIFFT and \
|
|
|
|
|
not TestSingleIFFT and \
|
|
|
|
|
not test_tpsv and \
|
|
|
|
|
not TestLinear and \
|
|
|
|
|
not test_Mx1_economic and \
|
|
|
|
|
not test_hegst and \
|
|
|
|
|
not test_tpqrt_tpmqrt and \
|
|
|
|
|
not test_pteqr and \
|
|
|
|
|
not test_against_numpy_convolve and \
|
|
|
|
|
not test_convolve_method and \
|
|
|
|
|
not test_rank1 and \
|
|
|
|
|
not test_splu_smoketest and \
|
|
|
|
|
not test_spilu_smoketest and \
|
|
|
|
|
not test_threads_parallel and \
|
|
|
|
|
not test_hermitian and \
|
|
|
|
|
not test_convergence'"
|
|
|
|
|
# some tests (namely test_logpdf_overflow) tend to run for a long time on s390x
|
|
|
|
|
TIMEOUT=1000
|
|
|
|
|
%endif
|
|
|
|
|
|
|
|
|
|
pushd %{buildroot}/%{python3_sitearch}
|
|
|
|
|
%{pytest} scipy
|
|
|
|
|
%{pytest} --timeout=${TIMEOUT} scipy
|
|
|
|
|
# Remove test remnants
|
|
|
|
|
rm -rf gram{A,B}
|
|
|
|
|
popd
|
|
|
|
|
%endif # with tests
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
%files -n python%{python3_pkgversion}-scipy
|
|
|
|
|
%files -n python3-scipy
|
|
|
|
|
%doc LICENSE.txt
|
|
|
|
|
%{python3_sitearch}/scipy/
|
|
|
|
|
%{python3_sitearch}/*.egg-info
|
|
|
|
|
|
|
|
|
|
%if %{with doc}
|
|
|
|
|
%files -n python%{python3_pkgversion}-scipy-doc
|
|
|
|
|
%files -n python3-scipy-doc
|
|
|
|
|
%license LICENSE.txt
|
|
|
|
|
%doc doc/build-%{python3_version}/html
|
|
|
|
|
%endif
|
|
|
|
|
|
|
|
|
|
%changelog
|
|
|
|
|
* Wed Apr 03 2024 MSVSphere Packaging Team <packager@msvsphere-os.ru> - 1.5.4-5
|
|
|
|
|
- Rebuilt for MSVSphere 8.10 beta
|
|
|
|
|
* Mon Feb 21 2022 Tomas Orsava <torsava@redhat.com> - 1.6.2-8
|
|
|
|
|
- Add gating configuration and a simple smoke test
|
|
|
|
|
- Related: rhbz#1950291
|
|
|
|
|
|
|
|
|
|
* Fri Jul 14 2023 Charalampos Stratakis <cstratak@redhat.com> - 1.5.4-5
|
|
|
|
|
- Skip some tests that fail on the ppc64le builders
|
|
|
|
|
- Resolves: rhbz#2217858
|
|
|
|
|
* Tue Feb 08 2022 Tomáš Hrnčiar <thrnciar@redhat.com> - 1.6.2-7
|
|
|
|
|
- Add automatically generated Obsoletes tag with the python39- prefix
|
|
|
|
|
for smoother upgrade from RHEL8
|
|
|
|
|
- Related: rhbz#1990421
|
|
|
|
|
|
|
|
|
|
* Fri Jul 14 2023 Charalampos Stratakis <cstratak@redhat.com> - 1.5.4-4
|
|
|
|
|
* Tue Aug 10 2021 Mohan Boddu <mboddu@redhat.com> - 1.6.2-6
|
|
|
|
|
- Rebuilt for IMA sigs, glibc 2.34, aarch64 flags
|
|
|
|
|
Related: rhbz#1991688
|
|
|
|
|
|
|
|
|
|
* Thu May 13 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-5
|
|
|
|
|
- Use proper LDFLAGS
|
|
|
|
|
related: #1945060
|
|
|
|
|
|
|
|
|
|
* Mon Apr 26 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-4
|
|
|
|
|
- Remove RPATH from certain shared object files
|
|
|
|
|
- Resolves: rhbz#2222715
|
|
|
|
|
related: #1945060
|
|
|
|
|
|
|
|
|
|
* Fri Apr 16 2021 Mohan Boddu <mboddu@redhat.com> - 1.6.2-3
|
|
|
|
|
- Rebuilt for RHEL 9 BETA on Apr 15th 2021. Related: rhbz#1947937
|
|
|
|
|
|
|
|
|
|
* Thu Apr 08 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-2
|
|
|
|
|
- Remove python-pytest-xdist dependency
|
|
|
|
|
resolves: #1945060
|
|
|
|
|
|
|
|
|
|
* Thu Mar 25 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-1
|
|
|
|
|
- New upstream release 1.6.2
|
|
|
|
|
resolves: #1942896
|
|
|
|
|
|
|
|
|
|
* Thu Feb 18 2021 Nikola Forró <nforro@redhat.com> - 1.6.1-1
|
|
|
|
|
- New upstream release 1.6.1
|
|
|
|
|
resolves: #1929994
|
|
|
|
|
|
|
|
|
|
* Wed Feb 03 2021 Nikola Forró <nforro@redhat.com> - 1.6.0-3
|
|
|
|
|
- Increase test timeout on s390x
|
|
|
|
|
|
|
|
|
|
* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.6.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Mon Jan 18 2021 Tomas Orsava <torsava@redhat.com> - 1.5.4-3
|
|
|
|
|
- Specify LDFLAGS explicitly
|
|
|
|
|
- Force preprocessing of Fortran sources to make annobin record proper flags
|
|
|
|
|
- Resolves: rhbz#1778983 rhbz#1877430
|
|
|
|
|
* Mon Jan 04 2021 Nikola Forró <nforro@redhat.com> - 1.6.0-1
|
|
|
|
|
- New upstream release 1.6.0
|
|
|
|
|
resolves: #1906692
|
|
|
|
|
|
|
|
|
|
* Mon Jan 18 2021 Tomas Orsava <torsava@redhat.com> - 1.5.4-2
|
|
|
|
|
- Convert from Fedora to the python39 module in RHEL8
|
|
|
|
|
- Resolves: rhbz#1877430
|
|
|
|
|
* Wed Nov 25 2020 Nikola Forró <nforro@redhat.com> - 1.5.4-2
|
|
|
|
|
- Skip factorial() float tests on Python 3.10
|
|
|
|
|
resolves: #1898157
|
|
|
|
|
|
|
|
|
|
* Thu Nov 05 2020 Nikola Forró <nforro@redhat.com> - 1.5.4-1
|
|
|
|
|
- New upstream release 1.5.4
|
|
|
|
|
@ -232,7 +237,7 @@ popd
|
|
|
|
|
|
|
|
|
|
* Mon Aug 31 2020 Nikola Forró <nforro@redhat.com> - 1.5.2-1
|
|
|
|
|
- New upstream release 1.5.2
|
|
|
|
|
resolves: #1853871 and 1840077
|
|
|
|
|
resolves: #1853871 and #1840077
|
|
|
|
|
|
|
|
|
|
* Sun Aug 16 2020 Iñaki Úcar <iucar@fedoraproject.org> - 1.5.0-4
|
|
|
|
|
- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
|
|
|
|
|
|
