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import python-zarr-2.16.1-5.el10

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i10ce changed/i10ce/python-zarr-2.16.1-5.el10
Arkady L. Shane 1 week ago
commit 076eae73b5
Signed by: tigro
GPG Key ID: 1EC08A25C9DB2503
5 changed files with 973 additions and 0 deletions
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1
.gitignore vendored
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SOURCES/zarr-2.16.1.tar.gz

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.python-zarr.metadata
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c7c2a9156e3918cc80c50a1903f7ab9dc7546c89 SOURCES/zarr-2.16.1.tar.gz

43
SOURCES/0001-Adapt-storage-tests-for-changes-in-fsspec-1819-1679.patch
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From 81707e55abc269ba01675ff5f3e4c16e158c021e Mon Sep 17 00:00:00 2001
From: Adam Williamson <awilliam@redhat.com>
Date: Mon, 17 Jun 2024 10:36:38 -0700
Subject: [PATCH] Adapt storage tests for changes in fsspec (#1819) (#1679)
This is adapted from the fixes that were rolled into
https://github.com/zarr-developers/zarr-python/pull/1785 for the
v3 branch.
Signed-off-by: Adam Williamson <awilliam@redhat.com>
---
zarr/tests/test_storage.py | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/zarr/tests/test_storage.py b/zarr/tests/test_storage.py
index da690f59..99af2f19 100644
--- a/zarr/tests/test_storage.py
+++ b/zarr/tests/test_storage.py
@@ -406,7 +406,9 @@ class StoreTests:
assert [] == store.listdir(self.root + "c/x/y")
assert [] == store.listdir(self.root + "c/d/y")
assert [] == store.listdir(self.root + "c/d/y/z")
- assert [] == store.listdir(self.root + "c/e/f")
+ # https://github.com/zarr-developers/zarr-python/issues/1819 and #1679
+ # fsspec changed from returning [] to returning ["f"] around 2024.3
+ assert store.listdir(self.root + "c/e/f") in ([], ["f"])
# test rename (optional)
if store.is_erasable():
@@ -1152,9 +1154,8 @@ class TestFSStore(StoreTests):
store[self.root + "foo"] = b"hello"
assert "foo" in os.listdir(str(path1) + "/" + self.root)
assert self.root + "foo" in store
- assert not os.listdir(str(path2))
- assert store[self.root + "foo"] == b"hello"
assert "foo" in os.listdir(str(path2))
+ assert store[self.root + "foo"] == b"hello"
def test_deep_ndim(self):
import zarr
--
2.45.2

675
SOURCES/0001-array-tests-handle-different-hexdigests-from-zlib-ng.patch
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From 13e0fc90d394d10abf44399cb1675b04fed18814 Mon Sep 17 00:00:00 2001
From: Adam Williamson <awilliam@redhat.com>
Date: Mon, 17 Jun 2024 11:25:08 -0700
Subject: [PATCH] array tests: handle different hexdigests from zlib-ng (#1678)
As explained in the issue, zlib-ng produces different hex digests
from original zlib. This adjusts the tests slightly to allow for
this.
Signed-off-by: Adam Williamson <awilliam@redhat.com>
---
zarr/tests/test_core.py | 458 ++++++++++++++++++++++++----------------
1 file changed, 274 insertions(+), 184 deletions(-)
diff --git a/zarr/tests/test_core.py b/zarr/tests/test_core.py
index 77b9415d..861aeefc 100644
--- a/zarr/tests/test_core.py
+++ b/zarr/tests/test_core.py
@@ -619,13 +619,25 @@ class TestArray:
def expected(self):
# tests for array without path will not be run for v3 stores
assert self.version == 2
- return [
- "063b02ff8d9d3bab6da932ad5828b506ef0a6578",
- "f97b84dc9ffac807415f750100108764e837bb82",
- "c7190ad2bea1e9d2e73eaa2d3ca9187be1ead261",
- "14470724dca6c1837edddedc490571b6a7f270bc",
- "2a1046dd99b914459b3e86be9dde05027a07d209",
- ]
+ return (
+ # zlib
+ [
+ "063b02ff8d9d3bab6da932ad5828b506ef0a6578",
+ "f97b84dc9ffac807415f750100108764e837bb82",
+ "c7190ad2bea1e9d2e73eaa2d3ca9187be1ead261",
+ "14470724dca6c1837edddedc490571b6a7f270bc",
+ "2a1046dd99b914459b3e86be9dde05027a07d209",
+ ],
+ # zlib-ng
+ [
+ "063b02ff8d9d3bab6da932ad5828b506ef0a6578",
+ "f97b84dc9ffac807415f750100108764e837bb82",
+ "c7190ad2bea1e9d2e73eaa2d3ca9187be1ead261",
+ "f3f04f0e30844739d34ef8a9eee6c949a47840b8",
+ "2a1046dd99b914459b3e86be9dde05027a07d209",
+ ],
+ )
+
def test_hexdigest(self):
found = []
@@ -664,7 +676,7 @@ class TestArray:
found.append(z.hexdigest())
z.store.close()
- assert self.expected() == found
+ assert found in self.expected()
def test_resize_1d(self):
@@ -1622,13 +1634,15 @@ class TestArrayWithPath(TestArray):
pass
def expected(self):
- return [
- "f710da18d45d38d4aaf2afd7fb822fdd73d02957",
- "1437428e69754b1e1a38bd7fc9e43669577620db",
- "6c530b6b9d73e108cc5ee7b6be3d552cc994bdbe",
- "4c0a76fb1222498e09dcd92f7f9221d6cea8b40e",
- "05b0663ffe1785f38d3a459dec17e57a18f254af",
- ]
+ return (
+ [
+ "f710da18d45d38d4aaf2afd7fb822fdd73d02957",
+ "1437428e69754b1e1a38bd7fc9e43669577620db",
+ "6c530b6b9d73e108cc5ee7b6be3d552cc994bdbe",
+ "4c0a76fb1222498e09dcd92f7f9221d6cea8b40e",
+ "05b0663ffe1785f38d3a459dec17e57a18f254af",
+ ],
+ )
def test_nbytes_stored(self):
@@ -1656,13 +1670,15 @@ class TestArrayWithChunkStore(TestArray):
return KVStore(dict())
def expected(self):
- return [
- "f710da18d45d38d4aaf2afd7fb822fdd73d02957",
- "1437428e69754b1e1a38bd7fc9e43669577620db",
- "6c530b6b9d73e108cc5ee7b6be3d552cc994bdbe",
- "4c0a76fb1222498e09dcd92f7f9221d6cea8b40e",
- "05b0663ffe1785f38d3a459dec17e57a18f254af",
- ]
+ return (
+ [
+ "f710da18d45d38d4aaf2afd7fb822fdd73d02957",
+ "1437428e69754b1e1a38bd7fc9e43669577620db",
+ "6c530b6b9d73e108cc5ee7b6be3d552cc994bdbe",
+ "4c0a76fb1222498e09dcd92f7f9221d6cea8b40e",
+ "05b0663ffe1785f38d3a459dec17e57a18f254af",
+ ],
+ )
def test_nbytes_stored(self):
@@ -1734,13 +1750,24 @@ class TestArrayWithNestedDirectoryStore(TestArrayWithDirectoryStore):
return store
def expected(self):
- return [
- "d174aa384e660eb51c6061fc8d20850c1159141f",
- "125f00eea40032f16016b292f6767aa3928c00a7",
- "1b52ead0ed889a781ebd4db077a29e35d513c1f3",
- "719a88b34e362ff65df30e8f8810c1146ab72bc1",
- "6e0abf30daf45de51593c227fb907759ca725551",
- ]
+ return (
+ # zlib
+ [
+ "d174aa384e660eb51c6061fc8d20850c1159141f",
+ "125f00eea40032f16016b292f6767aa3928c00a7",
+ "1b52ead0ed889a781ebd4db077a29e35d513c1f3",
+ "719a88b34e362ff65df30e8f8810c1146ab72bc1",
+ "6e0abf30daf45de51593c227fb907759ca725551",
+ ],
+ # zlib-ng
+ [
+ "d174aa384e660eb51c6061fc8d20850c1159141f",
+ "125f00eea40032f16016b292f6767aa3928c00a7",
+ "1b52ead0ed889a781ebd4db077a29e35d513c1f3",
+ "42d9c96e60ed22346c4671bc5bec32a2078ce25c",
+ "6e0abf30daf45de51593c227fb907759ca725551",
+ ],
+ )
class TestArrayWithN5Store(TestArrayWithDirectoryStore):
@@ -2028,13 +2055,24 @@ class TestArrayWithN5Store(TestArrayWithDirectoryStore):
assert np.all(a2[:] == 1)
def expected(self):
- return [
- "8811a77d54caaa1901d5cc4452d946ae433c8d90",
- "d880b007d9779db5f2cdbe13274eb1cbac4a425a",
- "d80eb66d5521744f051e816ab368d8ccfc2e3edf",
- "568f9f837e4b682a3819cb122988e2eebeb6572b",
- "4fdf4475d786d6694110db5619acd30c80dfc372",
- ]
+ return (
+ # zlib
+ [
+ "8811a77d54caaa1901d5cc4452d946ae433c8d90",
+ "d880b007d9779db5f2cdbe13274eb1cbac4a425a",
+ "d80eb66d5521744f051e816ab368d8ccfc2e3edf",
+ "568f9f837e4b682a3819cb122988e2eebeb6572b",
+ "4fdf4475d786d6694110db5619acd30c80dfc372",
+ ],
+ # zlib-ng
+ [
+ "8811a77d54caaa1901d5cc4452d946ae433c8d90",
+ "d880b007d9779db5f2cdbe13274eb1cbac4a425a",
+ "d80eb66d5521744f051e816ab368d8ccfc2e3edf",
+ "ea7d9e80211679291141840b111775b088e51480",
+ "4fdf4475d786d6694110db5619acd30c80dfc372",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -2112,13 +2150,15 @@ class TestArrayWithNoCompressor(TestArray):
compressor = None
def expected(self):
- return [
- "d3da3d485de4a5fcc6d91f9dfc6a7cba9720c561",
- "443b8dee512e42946cb63ff01d28e9bee8105a5f",
- "b75eb90f68aa8ee1e29f2c542e851d3945066c54",
- "42b6ae0d50ec361628736ab7e68fe5fefca22136",
- "a0535f31c130f5e5ac66ba0713d1c1ceaebd089b",
- ]
+ return (
+ [
+ "d3da3d485de4a5fcc6d91f9dfc6a7cba9720c561",
+ "443b8dee512e42946cb63ff01d28e9bee8105a5f",
+ "b75eb90f68aa8ee1e29f2c542e851d3945066c54",
+ "42b6ae0d50ec361628736ab7e68fe5fefca22136",
+ "a0535f31c130f5e5ac66ba0713d1c1ceaebd089b",
+ ],
+ )
class TestArrayWithBZ2Compressor(TestArray):
@@ -2126,13 +2166,15 @@ class TestArrayWithBZ2Compressor(TestArray):
compressor = BZ2(level=1)
def expected(self):
- return [
- "33141032439fb1df5e24ad9891a7d845b6c668c8",
- "44d719da065c88a412d609a5500ff41e07b331d6",
- "37c7c46e5730bba37da5e518c9d75f0d774c5098",
- "1e1bcaac63e4ef3c4a68f11672537131c627f168",
- "86d7b9bf22dccbeaa22f340f38be506b55e76ff2",
- ]
+ return (
+ [
+ "33141032439fb1df5e24ad9891a7d845b6c668c8",
+ "44d719da065c88a412d609a5500ff41e07b331d6",
+ "37c7c46e5730bba37da5e518c9d75f0d774c5098",
+ "1e1bcaac63e4ef3c4a68f11672537131c627f168",
+ "86d7b9bf22dccbeaa22f340f38be506b55e76ff2",
+ ],
+ )
class TestArrayWithBloscCompressor(TestArray):
@@ -2140,13 +2182,15 @@ class TestArrayWithBloscCompressor(TestArray):
compressor = Blosc(cname="zstd", clevel=1, shuffle=1)
def expected(self):
- return [
- "7ff2ae8511eac915fad311647c168ccfe943e788",
- "962705c861863495e9ccb7be7735907aa15e85b5",
- "74ed339cfe84d544ac023d085ea0cd6a63f56c4b",
- "90e30bdab745a9641cd0eb605356f531bc8ec1c3",
- "95d40c391f167db8b1290e3c39d9bf741edacdf6",
- ]
+ return (
+ [
+ "7ff2ae8511eac915fad311647c168ccfe943e788",
+ "962705c861863495e9ccb7be7735907aa15e85b5",
+ "74ed339cfe84d544ac023d085ea0cd6a63f56c4b",
+ "90e30bdab745a9641cd0eb605356f531bc8ec1c3",
+ "95d40c391f167db8b1290e3c39d9bf741edacdf6",
+ ],
+ )
try:
@@ -2161,13 +2205,15 @@ class TestArrayWithLZMACompressor(TestArray):
compressor = LZMA(preset=1)
def expected(self):
- return [
- "93ecaa530a1162a9d48a3c1dcee4586ccfc59bae",
- "04a9755a0cd638683531b7816c7fa4fbb6f577f2",
- "9de97b5c49b38e68583ed701d7e8f4c94b6a8406",
- "cde499f3dc945b4e97197ff8e3cf8188a1262c35",
- "e2cf3afbf66ad0e28a2b6b68b1b07817c69aaee2",
- ]
+ return (
+ [
+ "93ecaa530a1162a9d48a3c1dcee4586ccfc59bae",
+ "04a9755a0cd638683531b7816c7fa4fbb6f577f2",
+ "9de97b5c49b38e68583ed701d7e8f4c94b6a8406",
+ "cde499f3dc945b4e97197ff8e3cf8188a1262c35",
+ "e2cf3afbf66ad0e28a2b6b68b1b07817c69aaee2",
+ ],
+ )
class TestArrayWithFilters(TestArray):
@@ -2181,13 +2227,24 @@ class TestArrayWithFilters(TestArray):
)
def expected(self):
- return [
- "b80367c5599d47110d42bd8886240c2f46620dba",
- "95a7b2471225e73199c9716d21e8d3dd6e5f6f2a",
- "7300f1eb130cff5891630038fd99c28ef23d3a01",
- "c649ad229bc5720258b934ea958570c2f354c2eb",
- "62fc9236d78af18a5ec26c12eea1d33bce52501e",
- ]
+ return (
+ # zlib
+ [
+ "b80367c5599d47110d42bd8886240c2f46620dba",
+ "95a7b2471225e73199c9716d21e8d3dd6e5f6f2a",
+ "7300f1eb130cff5891630038fd99c28ef23d3a01",
+ "c649ad229bc5720258b934ea958570c2f354c2eb",
+ "62fc9236d78af18a5ec26c12eea1d33bce52501e",
+ ],
+ # zlib-ng
+ [
+ "b80367c5599d47110d42bd8886240c2f46620dba",
+ "95a7b2471225e73199c9716d21e8d3dd6e5f6f2a",
+ "7300f1eb130cff5891630038fd99c28ef23d3a01",
+ "1e053b6ad7dc58de7b1f5dad7fb45851f6b7b3ee",
+ "62fc9236d78af18a5ec26c12eea1d33bce52501e",
+ ],
+ )
def test_astype_no_filters(self):
shape = (100,)
@@ -2312,7 +2369,8 @@ class TestArrayWithCustomMapping(TestArray):
z = self.create_array(shape=1000, chunks=100)
assert 245 == z.nbytes_stored
z[:] = 42
- assert 515 == z.nbytes_stored
+ # 515 is zlib, 485 is zlib-ng
+ assert z.nbytes_stored in (515, 485)
class TestArrayNoCache(TestArray):
@@ -2407,13 +2465,15 @@ class TestArrayWithFSStore(TestArray):
return store
def expected(self):
- return [
- "ab753fc81df0878589535ca9bad2816ba88d91bc",
- "c16261446f9436b1e9f962e57ce3e8f6074abe8a",
- "c2ef3b2fb2bc9dcace99cd6dad1a7b66cc1ea058",
- "6e52f95ac15b164a8e96843a230fcee0e610729b",
- "091fa99bc60706095c9ce30b56ce2503e0223f56",
- ]
+ return (
+ [
+ "ab753fc81df0878589535ca9bad2816ba88d91bc",
+ "c16261446f9436b1e9f962e57ce3e8f6074abe8a",
+ "c2ef3b2fb2bc9dcace99cd6dad1a7b66cc1ea058",
+ "6e52f95ac15b164a8e96843a230fcee0e610729b",
+ "091fa99bc60706095c9ce30b56ce2503e0223f56",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -2439,13 +2499,15 @@ class TestArrayWithFSStoreFromFilesystem(TestArray):
return store
def expected(self):
- return [
- "ab753fc81df0878589535ca9bad2816ba88d91bc",
- "c16261446f9436b1e9f962e57ce3e8f6074abe8a",
- "c2ef3b2fb2bc9dcace99cd6dad1a7b66cc1ea058",
- "6e52f95ac15b164a8e96843a230fcee0e610729b",
- "091fa99bc60706095c9ce30b56ce2503e0223f56",
- ]
+ return (
+ [
+ "ab753fc81df0878589535ca9bad2816ba88d91bc",
+ "c16261446f9436b1e9f962e57ce3e8f6074abe8a",
+ "c2ef3b2fb2bc9dcace99cd6dad1a7b66cc1ea058",
+ "6e52f95ac15b164a8e96843a230fcee0e610729b",
+ "091fa99bc60706095c9ce30b56ce2503e0223f56",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -2460,13 +2522,15 @@ class TestArrayWithFSStorePartialRead(TestArray):
return store
def expected(self):
- return [
- "dd7577d645c38767cf6f6d1ef8fd64002883a014",
- "aa0de9892cf1ed3cda529efbf3233720b84489b7",
- "e6191c44cf958576c29c41cef0f55b028a4dbdff",
- "88adeeabb819feecccadf50152293dbb42f9107e",
- "1426e084427f9920e29c9ec81b663d1005849455",
- ]
+ return (
+ [
+ "dd7577d645c38767cf6f6d1ef8fd64002883a014",
+ "aa0de9892cf1ed3cda529efbf3233720b84489b7",
+ "e6191c44cf958576c29c41cef0f55b028a4dbdff",
+ "88adeeabb819feecccadf50152293dbb42f9107e",
+ "1426e084427f9920e29c9ec81b663d1005849455",
+ ],
+ )
def test_non_cont(self):
z = self.create_array(shape=(500, 500, 500), chunks=(50, 50, 50), dtype="<i4")
@@ -2501,13 +2565,15 @@ class TestArrayWithFSStoreNested(TestArrayWithFSStore):
dimension_separator = "/"
def expected(self):
- return [
- "94884f29b41b9beb8fc99ad7bf9c0cbf0f2ab3c9",
- "077aa3bd77b8d354f8f6c15dce5ae4f545788a72",
- "22be95d83c097460adb339d80b2d7fe19c513c16",
- "85131cec526fa46938fd2c4a6083a58ee11037ea",
- "c3167010c162c6198cb2bf3c1da2c46b047c69a1",
- ]
+ return (
+ [
+ "94884f29b41b9beb8fc99ad7bf9c0cbf0f2ab3c9",
+ "077aa3bd77b8d354f8f6c15dce5ae4f545788a72",
+ "22be95d83c097460adb339d80b2d7fe19c513c16",
+ "85131cec526fa46938fd2c4a6083a58ee11037ea",
+ "c3167010c162c6198cb2bf3c1da2c46b047c69a1",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -2517,13 +2583,15 @@ class TestArrayWithFSStoreNestedPartialRead(TestArrayWithFSStore):
partial_decompress = True
def expected(self):
- return [
- "94884f29b41b9beb8fc99ad7bf9c0cbf0f2ab3c9",
- "077aa3bd77b8d354f8f6c15dce5ae4f545788a72",
- "22be95d83c097460adb339d80b2d7fe19c513c16",
- "85131cec526fa46938fd2c4a6083a58ee11037ea",
- "c3167010c162c6198cb2bf3c1da2c46b047c69a1",
- ]
+ return (
+ [
+ "94884f29b41b9beb8fc99ad7bf9c0cbf0f2ab3c9",
+ "077aa3bd77b8d354f8f6c15dce5ae4f545788a72",
+ "22be95d83c097460adb339d80b2d7fe19c513c16",
+ "85131cec526fa46938fd2c4a6083a58ee11037ea",
+ "c3167010c162c6198cb2bf3c1da2c46b047c69a1",
+ ],
+ )
def test_non_cont(self):
z = self.create_array(shape=(500, 500, 500), chunks=(50, 50, 50), dtype="<i4")
@@ -2569,13 +2637,15 @@ class TestArrayV3(TestArray):
def expected(self):
# tests for array without path will not be run for v3 stores
assert self.version == 3
- return [
- "73ab8ace56719a5c9308c3754f5e2d57bc73dc20",
- "5fb3d02b8f01244721582929b3cad578aec5cea5",
- "26b098bedb640846e18dc2fbc1c27684bb02b532",
- "799a458c287d431d747bec0728987ca4fe764549",
- "c780221df84eb91cb62f633f12d3f1eaa9cee6bd",
- ]
+ return (
+ [
+ "73ab8ace56719a5c9308c3754f5e2d57bc73dc20",
+ "5fb3d02b8f01244721582929b3cad578aec5cea5",
+ "26b098bedb640846e18dc2fbc1c27684bb02b532",
+ "799a458c287d431d747bec0728987ca4fe764549",
+ "c780221df84eb91cb62f633f12d3f1eaa9cee6bd",
+ ],
+ )
# TODO: fix test_nbytes_stored
@@ -2637,13 +2707,15 @@ class TestArrayWithPathV3(TestArrayV3):
assert (meta_root + path + ".array.json") in store
def expected(self):
- return [
- "73ab8ace56719a5c9308c3754f5e2d57bc73dc20",
- "5fb3d02b8f01244721582929b3cad578aec5cea5",
- "26b098bedb640846e18dc2fbc1c27684bb02b532",
- "799a458c287d431d747bec0728987ca4fe764549",
- "c780221df84eb91cb62f633f12d3f1eaa9cee6bd",
- ]
+ return (
+ [
+ "73ab8ace56719a5c9308c3754f5e2d57bc73dc20",
+ "5fb3d02b8f01244721582929b3cad578aec5cea5",
+ "26b098bedb640846e18dc2fbc1c27684bb02b532",
+ "799a458c287d431d747bec0728987ca4fe764549",
+ "c780221df84eb91cb62f633f12d3f1eaa9cee6bd",
+ ],
+ )
def test_nbytes_stored(self):
@@ -2713,13 +2785,15 @@ class TestArrayWithChunkStoreV3(TestArrayV3):
return store
def expected(self):
- return [
- "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
- "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
- "b663857bb89a8ab648390454954a9cdd453aa24b",
- "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
- "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
- ]
+ return (
+ [
+ "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
+ "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
+ "b663857bb89a8ab648390454954a9cdd453aa24b",
+ "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
+ "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
+ ],
+ )
def test_nbytes_stored(self):
@@ -2949,13 +3023,15 @@ class TestArrayWithFSStoreV3(TestArrayV3):
return store
def expected(self):
- return [
- "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
- "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
- "b663857bb89a8ab648390454954a9cdd453aa24b",
- "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
- "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
- ]
+ return (
+ [
+ "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
+ "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
+ "b663857bb89a8ab648390454954a9cdd453aa24b",
+ "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
+ "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -2979,13 +3055,15 @@ class TestArrayWithFSStoreV3FromFilesystem(TestArrayWithFSStoreV3):
return store
def expected(self):
- return [
- "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
- "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
- "b663857bb89a8ab648390454954a9cdd453aa24b",
- "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
- "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
- ]
+ return (
+ [
+ "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
+ "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
+ "b663857bb89a8ab648390454954a9cdd453aa24b",
+ "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
+ "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -2994,13 +3072,15 @@ class TestArrayWithFSStoreV3PartialRead(TestArrayWithFSStoreV3):
partial_decompress = True
def expected(self):
- return [
- "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
- "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
- "b663857bb89a8ab648390454954a9cdd453aa24b",
- "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
- "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
- ]
+ return (
+ [
+ "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
+ "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
+ "b663857bb89a8ab648390454954a9cdd453aa24b",
+ "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
+ "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -3031,13 +3111,15 @@ class TestArrayWithFSStoreV3PartialReadUncompressedSharded(TestArrayWithFSStoreV
assert not z.chunk_store.supports_efficient_set_partial_values()
def expected(self):
- return [
- "90109fc2a4e17efbcb447003ea1c08828b91f71e",
- "2b73519f7260dba3ddce0d2b70041888856fec6b",
- "bca5798be2ed71d444f3045b05432d937682b7dd",
- "9ff1084501e28520e577662a6e3073f1116c76a2",
- "882a97cad42417f90f111d0cb916a21579650467",
- ]
+ return (
+ [
+ "90109fc2a4e17efbcb447003ea1c08828b91f71e",
+ "2b73519f7260dba3ddce0d2b70041888856fec6b",
+ "bca5798be2ed71d444f3045b05432d937682b7dd",
+ "9ff1084501e28520e577662a6e3073f1116c76a2",
+ "882a97cad42417f90f111d0cb916a21579650467",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -3046,13 +3128,15 @@ class TestArrayWithFSStoreV3Nested(TestArrayWithFSStoreV3):
dimension_separator = "/"
def expected(self):
- return [
- "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
- "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
- "b663857bb89a8ab648390454954a9cdd453aa24b",
- "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
- "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
- ]
+ return (
+ [
+ "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
+ "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
+ "b663857bb89a8ab648390454954a9cdd453aa24b",
+ "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
+ "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
+ ],
+ )
@pytest.mark.skipif(have_fsspec is False, reason="needs fsspec")
@@ -3061,13 +3145,15 @@ class TestArrayWithFSStoreV3NestedPartialRead(TestArrayWithFSStoreV3):
dimension_separator = "/"
def expected(self):
- return [
- "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
- "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
- "b663857bb89a8ab648390454954a9cdd453aa24b",
- "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
- "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
- ]
+ return (
+ [
+ "1509abec4285494b61cd3e8d21f44adc3cf8ddf6",
+ "7cfb82ec88f7ecb7ab20ae3cb169736bc76332b8",
+ "b663857bb89a8ab648390454954a9cdd453aa24b",
+ "21e90fa927d09cbaf0e3b773130e2dc05d18ff9b",
+ "e8c1fdd18b5c2ee050b59d0c8c95d07db642459c",
+ ],
+ )
@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@@ -3078,13 +3164,15 @@ class TestArrayWithStorageTransformersV3(TestArrayWithChunkStoreV3):
)
def expected(self):
- return [
- "3fb9a4f8233b09ad02067b6b7fc9fd5caa405c7d",
- "89c8eb364beb84919fc9153d2c1ed2696274ec18",
- "73307055c3aec095dd1232c38d793ef82a06bd97",
- "6152c09255a5efa43b1a115546e35affa00c138c",
- "2f8802fc391f67f713302e84fad4fd8f1366d6c2",
- ]
+ return (
+ [
+ "3fb9a4f8233b09ad02067b6b7fc9fd5caa405c7d",
+ "89c8eb364beb84919fc9153d2c1ed2696274ec18",
+ "73307055c3aec095dd1232c38d793ef82a06bd97",
+ "6152c09255a5efa43b1a115546e35affa00c138c",
+ "2f8802fc391f67f713302e84fad4fd8f1366d6c2",
+ ],
+ )
@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@@ -3124,13 +3212,15 @@ class TestArrayWithShardingStorageTransformerV3(TestArrayV3):
assert not z.chunk_store.supports_efficient_set_partial_values()
def expected(self):
- return [
- "90109fc2a4e17efbcb447003ea1c08828b91f71e",
- "2b73519f7260dba3ddce0d2b70041888856fec6b",
- "bca5798be2ed71d444f3045b05432d937682b7dd",
- "9ff1084501e28520e577662a6e3073f1116c76a2",
- "882a97cad42417f90f111d0cb916a21579650467",
- ]
+ return (
+ [
+ "90109fc2a4e17efbcb447003ea1c08828b91f71e",
+ "2b73519f7260dba3ddce0d2b70041888856fec6b",
+ "bca5798be2ed71d444f3045b05432d937682b7dd",
+ "9ff1084501e28520e577662a6e3073f1116c76a2",
+ "882a97cad42417f90f111d0cb916a21579650467",
+ ],
+ )
@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
--
2.45.2

253
SPECS/python-zarr.spec
Unescape View File

@ -0,0 +1,253 @@
## START: Set by rpmautospec
## (rpmautospec version 0.6.5)
## RPMAUTOSPEC: autorelease, autochangelog
%define autorelease(e:s:pb:n) %{?-p:0.}%{lua:
release_number = 5;
base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}"));
print(release_number + base_release_number - 1);
}%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}}
## END: Set by rpmautospec
%global srcname zarr
Name: python-%{srcname}
Version: 2.16.1
Release: %autorelease
Summary: Chunked, compressed, N-dimensional arrays for Python
License: MIT
URL: https://github.com/zarr-developers/zarr
Source0: %{pypi_source}
# https://github.com/zarr-developers/zarr-python/pull/1970
# https://github.com/zarr-developers/zarr-python/issues/1819
# fix tests with recent fsspec
Patch: 0001-Adapt-storage-tests-for-changes-in-fsspec-1819-1679.patch
# https://github.com/zarr-developers/zarr-python/pull/1972
# https://github.com/zarr-developers/zarr-python/issues/1678
# fix tests with zlib-ng
Patch: 0001-array-tests-handle-different-hexdigests-from-zlib-ng.patch
BuildArch: noarch
BuildRequires: python3-devel
# Test dependencies
BuildRequires: python3dist(bsddb3)
BuildRequires: python3dist(fsspec)
BuildRequires: python3dist(h5py)
# lmdb is FTBFS and FTI: https://bugzilla.redhat.com/show_bug.cgi?id=2259530
# not having it causes several tests to be skipped
#BuildRequires: python3dist(lmdb)
BuildRequires: python3dist(msgpack)
BuildRequires: python3dist(pytest)
%description
Zarr is a Python package providing an implementation of compressed, chunked,
N-dimensional arrays, designed for use in parallel computing.
%package -n python3-%{srcname}
Summary: %{summary}
%description -n python3-%{srcname}
Zarr is a Python package providing an implementation of compressed, chunked,
N-dimensional arrays, designed for use in parallel computing.
%package -n python-%{srcname}-doc
Summary: zarr documentation
BuildArch: noarch
BuildRequires: python3dist(numpydoc)
BuildRequires: python3dist(sphinx)
BuildRequires: python3dist(sphinx-copybutton)
BuildRequires: python3dist(sphinx-design)
BuildRequires: python3dist(sphinx-issues)
BuildRequires: python3dist(pydata-sphinx-theme)
%description -n python-%{srcname}-doc
Documentation for zarr
%prep
%autosetup -n %{srcname}-%{version} -p1
%generate_buildrequires
%pyproject_buildrequires -r
%build
%pyproject_wheel
# generate html docs
PYTHONPATH=${PWD} sphinx-build-3 docs html
# remove the sphinx-build leftovers
rm -rf html/.{doctrees,buildinfo,_static/donotdelete}
%install
%pyproject_install
%pyproject_save_files %{srcname}
%check
%pytest -ra
%files -n python3-%{srcname} -f %{pyproject_files}
%license LICENSE.txt
%doc README.md
%files -n python-%{srcname}-doc
%doc html
%license LICENSE.txt
%changelog
* Sun Jan 05 2025 Arkady L. Shane <tigro@msvsphere-os.ru> - 2.16.1-5
- Rebuilt for MSVSphere 10
## START: Generated by rpmautospec
* Fri Jul 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.16.1-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
* Mon Jun 17 2024 Adam Williamson <awilliam@redhat.com> - 2.16.1-4
- Backport PRs #1970 and #1972 to fix tests for new fsspec and zlib-ng
* Fri Jan 26 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.16.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.16.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Mon Sep 18 2023 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.16.1-1
- Update to latest version (#2232757)
* Sun Jul 23 2023 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.16.0-1
- Update to latest version (#2192508)
* Fri Jul 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.14.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Wed Jul 12 2023 Python Maint <python-maint@redhat.com> - 2.14.2-2
- Rebuilt for Python 3.12
* Sun Mar 26 2023 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.14.2-1
- Update to latest version (#2173206)
* Mon Feb 20 2023 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.14.1-1
- Update to latest version (#2161372)
* Fri Jan 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.13.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Mon Oct 17 2022 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.13.3-1
- Update to latest version (#2083474)
* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.11.3-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Mon Jun 20 2022 Python Maint <python-maint@redhat.com> - 2.11.3-2
- Rebuilt for Python 3.11
* Mon Apr 18 2022 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.11.3-1
- Update to latest version (#2071916)
* Thu Mar 10 2022 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.11.1-1
- Update to latest version (#2015675)
* Fri Jan 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Sat Oct 02 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.10.1-1
- Update to latest version (#2009232)
* Sat Sep 04 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.9.5-1
- Update to latest version (#1999283)
* Fri Aug 27 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.9.3-1
- Update to latest version (#1998048)
* Wed Aug 25 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.9.2-1
- Update to latest version (#1996553)
* Mon Aug 23 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.8.3-6
- Switch to latest Python macros.
* Sun Aug 01 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.8.3-3
- Fix build with Sphinx 4
- Closes rhbz#1977650
* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.3-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 2.8.3-2
- Rebuilt for Python 3.10
* Fri May 21 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.8.3-1
- Update to latest version (#1962736)
* Thu May 20 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.8.2-1
- Update to latest version (#1962054)
* Tue Apr 27 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.8.1-1
- Update to latest version
* Sun Apr 25 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.8.0-1
- Update to latest version (#1953163)
* Fri Apr 16 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.7.1-1
- Update to latest version (#1950334)
* Sun Apr 04 2021 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.7.0-1
- Update to latest version (#1942910)
* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.6.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Sat Dec 12 2020 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.6.1-1
- Update to latest version (#1903794)
* Sat Oct 10 2020 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.5.0-1
- Update to latest version (#1885678)
* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 2.4.0-2
- Rebuilt for Python 3.9
* Tue Jan 28 2020 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.4.0-1
- Update to latest version
* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 2.3.2-5
- Rebuilt for Python 3.8.0rc1 (#1748018)
* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 2.3.2-4
- Rebuilt for Python 3.8
* Fri Jul 26 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.3.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
* Wed Jun 05 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.3.2-2
- Fix tests on 32-bit arches
* Thu May 30 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.3.2-1
- Update to latest version
* Tue Apr 02 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.3.1-2
- Fix tests on big-endian arches
* Mon Apr 01 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.3.1-1
- Update to latest version
* Mon Mar 18 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.2.0-2
- Fix test running
- Make doc subpackage noarch
* Sat Mar 16 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.2.0-1
- Initial package.
## END: Generated by rpmautospec
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