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Update to 1.8.16

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epel9
Orion Poplawski 9 years ago
parent ed2be27293
commit b7e31a4e33
4 changed files with 47 additions and 69 deletions
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2
.gitignore vendored
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@ -17,3 +17,5 @@ hdf5-1.8.5.tar.bz2
/hdf5-1.8.15.tar.bz2 /hdf5-1.8.15.tar.bz2
/hdf5_1.8.14+docs-3.debian.tar.xz /hdf5_1.8.14+docs-3.debian.tar.xz
/hdf5-1.8.15-patch1.tar.bz2 /hdf5-1.8.15-patch1.tar.bz2
/hdf5-1.8.16.tar.bz2
/hdf5_1.8.15-patch1+docs-5.debian.tar.xz

96
hdf5-ldouble-ppc64le.patch
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@ -1,69 +1,39 @@
diff -up hdf5-1.8.12/configure.ac.ldouble-ppc64le hdf5-1.8.12/configure.ac diff -up hdf5-1.8.16/configure.ac.ldouble-ppc64le hdf5-1.8.16/configure.ac
--- hdf5-1.8.12/configure.ac.ldouble-ppc64le 2014-03-19 08:58:07.933233530 -0600 --- hdf5-1.8.16/configure.ac.ldouble-ppc64le 2015-11-13 09:29:08.749125801 -0700
+++ hdf5-1.8.12/configure.ac 2014-03-19 09:01:48.651040050 -0600 +++ hdf5-1.8.16/configure.ac 2015-11-13 09:47:02.705174991 -0700
@@ -3766,6 +3766,13 @@ else @@ -2278,6 +2278,13 @@ else
unsigned char s2[8]; unsigned char s2[8];
int ret = 1; int ret = 1;
+#if defined __powerpc64__ && defined _LITTLE_ENDIAN
+ /* Don't bother checking on ppc64le, we know it'll work, and
+ * that what hdf5 calls 'special algorithm' simply is
+ * IBM ldouble 128 (i.e. two seperately scaled doubles).
+ * The check below assumes big endian. */
+ ret = 0;
+#endif
if(sizeof(long double) == 16 && sizeof(long) == 8) {
/*make sure the long double type has 16 bytes in size and
* 11 bits of exponent. If it is,
@@ -3844,6 +3851,13 @@ else
unsigned char s[16];
int flag=0, ret=1;
+#if defined __powerpc64__ && defined _LITTLE_ENDIAN +#if defined __powerpc64__ && defined _LITTLE_ENDIAN
+ /* Don't bother checking on ppc64le, we know it'll work, and + /* Don't bother checking on ppc64le, we know it'll work, and
+ * that what hdf5 calls 'special algorithm' simply is + * that what hdf5 calls 'special algorithm' simply is
+ * IBM ldouble 128 (i.e. two seperately scaled doubles). + * IBM ldouble 128 (i.e. two seperately scaled doubles).
+ * The check below assumes big endian. */ + * The check below assumes big endian. */
+ ret = 0; + ret = 0;
+#endif +#endif
/*Determine if long double has 16 byte in size, 11 bit exponent, and if(sizeof(long double) == 16 && sizeof(long) == 8) {
*the bias is 0x3ff */ /*make sure the long double type has 16 bytes in size and
if(sizeof(long double) == 16) { * 11 bits of exponent. If it is,
diff -up hdf5-1.8.12/configure.ldouble-ppc64le hdf5-1.8.12/configure @@ -2355,6 +2362,13 @@ else
--- hdf5-1.8.12/configure.ldouble-ppc64le 2014-03-19 08:58:07.918233616 -0600 unsigned char s[16];
+++ hdf5-1.8.12/configure 2014-03-19 08:58:07.932233536 -0600 int flag=0, ret=1;
@@ -30362,6 +30362,13 @@ else
unsigned char s2[8];
int ret = 1;
+#if defined __powerpc64__ && defined _LITTLE_ENDIAN
+ /* Don't bother checking on ppc64le, we know it'll work, and
+ that what hdf5 calls 'special algorithm' simply is
+ IBM ldouble 128 (i.e. two seperately scaled doubles).
+ The check below assumes big endian. */
+ ret = 0;
+#endif
if(sizeof(long double) == 16 && sizeof(long) == 8) {
/*make sure the long double type has 16 bytes in size and
* 11 bits of exponent. If it is,
@@ -30466,6 +30473,13 @@ else
unsigned char s[16];
int flag=0, ret=1;
+#if defined __powerpc64__ && defined _LITTLE_ENDIAN +#if defined __powerpc64__ && defined _LITTLE_ENDIAN
+ /* Don't bother checking on ppc64le, we know it'll work, and + /* Don't bother checking on ppc64le, we know it'll work, and
+ that what hdf5 calls 'special algorithm' simply is + * that what hdf5 calls 'special algorithm' simply is
+ IBM ldouble 128 (i.e. two seperately scaled doubles). + * IBM ldouble 128 (i.e. two seperately scaled doubles).
+ The check below assumes big endian. */ + * The check below assumes big endian. */
+ ret = 0; + ret = 0;
+#endif +#endif
/*Determine if long double has 16 byte in size, 11 bit exponent, and /*Determine if long double has 16 byte in size, 11 bit exponent, and
*the bias is 0x3ff */ *the bias is 0x3ff */
if(sizeof(long double) == 16) { if(sizeof(long double) == 16) {
diff -up hdf5-1.8.12/test/dt_arith.c.ldouble-ppc64le hdf5-1.8.12/test/dt_arith.c diff -up hdf5-1.8.16/configure.ldouble-ppc64le hdf5-1.8.16/configure
--- hdf5-1.8.12/test/dt_arith.c.ldouble-ppc64le 2013-11-21 08:14:03.000000000 -0700 diff -up hdf5-1.8.16/test/dt_arith.c.ldouble-ppc64le hdf5-1.8.16/test/dt_arith.c
+++ hdf5-1.8.12/test/dt_arith.c 2014-03-19 08:58:07.935233518 -0600 --- hdf5-1.8.16/test/dt_arith.c.ldouble-ppc64le 2015-10-23 23:13:43.000000000 -0600
@@ -3072,7 +3072,18 @@ test_conv_flt_1 (const char *name, int r +++ hdf5-1.8.16/test/dt_arith.c 2015-11-13 09:29:08.765125707 -0700
@@ -3010,7 +3010,18 @@ test_conv_flt_1 (const char *name, int r
buf, saved, nelmts); buf, saved, nelmts);
#if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE && H5_SIZEOF_LONG_DOUBLE!=0 #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE && H5_SIZEOF_LONG_DOUBLE!=0
} else if(src_type == FLT_LDOUBLE) { } else if(src_type == FLT_LDOUBLE) {
@ -83,7 +53,7 @@ diff -up hdf5-1.8.12/test/dt_arith.c.ldouble-ppc64le hdf5-1.8.12/test/dt_arith.c
buf, saved, nelmts); buf, saved, nelmts);
#endif #endif
} else } else
@@ -3807,7 +3818,18 @@ test_conv_int_fp(const char *name, int r @@ -3663,7 +3674,18 @@ test_conv_int_fp(const char *name, int r
INIT_FP_DENORM(long double, LDBL_MANT_DIG, src_size, src_nbits, sendian, dst_size, INIT_FP_DENORM(long double, LDBL_MANT_DIG, src_size, src_nbits, sendian, dst_size,
buf, saved, nelmts); buf, saved, nelmts);
} else { } else {

14
hdf5.spec
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@ -1,13 +1,13 @@
%global macrosdir %(d=%{_rpmconfigdir}/macros.d; [ -d $d ] || d=%{_sysconfdir}/rpm; echo $d) %global macrosdir %(d=%{_rpmconfigdir}/macros.d; [ -d $d ] || d=%{_sysconfdir}/rpm; echo $d)
# Patch version? # Patch version?
%global snaprel -patch1 %global snaprel %{nil}
# NOTE: Try not to release new versions to released versions of Fedora # NOTE: Try not to release new versions to released versions of Fedora
# You need to recompile all users of HDF5 for each version change # You need to recompile all users of HDF5 for each version change
Name: hdf5 Name: hdf5
Version: 1.8.15 Version: 1.8.16
Release: 9.patch1%{?dist} Release: 1%{?dist}
Summary: A general purpose library and file format for storing scientific data Summary: A general purpose library and file format for storing scientific data
License: BSD License: BSD
Group: System Environment/Libraries Group: System Environment/Libraries
@ -16,7 +16,7 @@ URL: http://www.hdfgroup.org/HDF5/
Source0: http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{version}%{?snaprel}/src/hdf5-%{version}%{?snaprel}.tar.bz2 Source0: http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{version}%{?snaprel}/src/hdf5-%{version}%{?snaprel}.tar.bz2
Source1: h5comp Source1: h5comp
# For man pages # For man pages
Source2: http://ftp.us.debian.org/debian/pool/main/h/hdf5/hdf5_1.8.14+docs-3.debian.tar.xz Source2: http://ftp.us.debian.org/debian/pool/main/h/hdf5/hdf5_1.8.15-patch1+docs-5.debian.tar.xz
Patch0: hdf5-LD_LIBRARY_PATH.patch Patch0: hdf5-LD_LIBRARY_PATH.patch
# Fix -Werror=format-security errors # Fix -Werror=format-security errors
Patch2: hdf5-format.patch Patch2: hdf5-format.patch
@ -304,6 +304,7 @@ done
%{_bindir}/h5stat %{_bindir}/h5stat
%{_bindir}/h5unjam %{_bindir}/h5unjam
%{_libdir}/*.so.10* %{_libdir}/*.so.10*
%{_libdir}/libhdf5_*cpp.so.11*
%{_mandir}/man1/gif2h5.1* %{_mandir}/man1/gif2h5.1*
%{_mandir}/man1/h52gif.1* %{_mandir}/man1/h52gif.1*
%{_mandir}/man1/h5copy.1* %{_mandir}/man1/h5copy.1*
@ -369,6 +370,7 @@ done
%{_libdir}/mpich/bin/h5pfc %{_libdir}/mpich/bin/h5pfc
%{_libdir}/mpich/lib/lib*.so %{_libdir}/mpich/lib/lib*.so
%{_libdir}/mpich/lib/lib*.settings %{_libdir}/mpich/lib/lib*.settings
%{_libdir}/mpich/share/hdf5_examples/
%{_libdir}/mpich/share/man/man1/h5pcc.1* %{_libdir}/mpich/share/man/man1/h5pcc.1*
%{_libdir}/mpich/share/man/man1/h5pfc.1* %{_libdir}/mpich/share/man/man1/h5pfc.1*
@ -406,6 +408,7 @@ done
%{_libdir}/openmpi/bin/h5pfc %{_libdir}/openmpi/bin/h5pfc
%{_libdir}/openmpi/lib/lib*.so %{_libdir}/openmpi/lib/lib*.so
%{_libdir}/openmpi/lib/lib*.settings %{_libdir}/openmpi/lib/lib*.settings
%{_libdir}/openmpi/share/hdf5_examples/
%{_libdir}/openmpi/share/man/man1/h5pcc.1* %{_libdir}/openmpi/share/man/man1/h5pcc.1*
%{_libdir}/openmpi/share/man/man1/h5pfc.1* %{_libdir}/openmpi/share/man/man1/h5pfc.1*
@ -415,6 +418,9 @@ done
%changelog %changelog
* Fri Nov 20 2015 Orion Poplawski <orion@cora.nwra.com> - 1.8.16
- Update to 1.8.16
* Fri Nov 20 2015 Orion Poplawski <orion@cora.nwra.com> - 1.8.15-9.patch1 * Fri Nov 20 2015 Orion Poplawski <orion@cora.nwra.com> - 1.8.15-9.patch1
- Use MPI_FORTRAN_MOD_DIR to locate MPI Fortran module - Use MPI_FORTRAN_MOD_DIR to locate MPI Fortran module

4
sources
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@ -1,2 +1,2 @@
3c0d7a8c38d1abc7b40fc12c1d5f2bb8 hdf5-1.8.15-patch1.tar.bz2 79c1593573ebddf734eee8d43ecfe483 hdf5-1.8.16.tar.bz2
a4aec59741a8a4dd702c0841ad514c97 hdf5_1.8.14+docs-3.debian.tar.xz 27a477d0c3d017759b4ad47a90762ed0 hdf5_1.8.15-patch1+docs-5.debian.tar.xz

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