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auto-import hdf5-1.6.4-4 on branch devel from hdf5-1.6.4-4.src.rpm

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epel9
Orion Poplawski 20 years ago
parent 49212e8f72
commit b5174ee468
8 changed files with 324 additions and 0 deletions
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1
.cvsignore
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hdf5-1.6.4.tar.gz

60
hdf5-1.6.4-destdir.patch
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--- hdf5-1.6.4/config/commence.in.BAD 2005-04-03 13:52:00.000000000 -0500
+++ hdf5-1.6.4/config/commence.in 2005-04-03 13:52:53.000000000 -0500
@@ -35,11 +35,11 @@
TRACE=:
## Installation points
-prefix=@prefix@
-exec_prefix=@exec_prefix@
-bindir=@bindir@
-libdir=@libdir@
-includedir=@includedir@
-docdir=@exec_prefix@/doc
+prefix=$(DESTDIR)@prefix@
+exec_prefix=$(DESTDIR)@exec_prefix@
+bindir=$(DESTDIR)@bindir@
+libdir=$(DESTDIR)@libdir@
+includedir=$(DESTDIR)@includedir@
+docdir=$(DESTDIR)@exec_prefix@/doc
PUB_LIB=$(LIB)
--- hdf5-1.6.4/fortran/config/commence.in.BAD 2005-04-03 14:08:27.000000000 -0500
+++ hdf5-1.6.4/fortran/config/commence.in 2005-04-03 14:08:48.000000000 -0500
@@ -40,11 +40,11 @@
TRACE=:
## Installation points
-prefix=@prefix@
-exec_prefix=@exec_prefix@
-bindir=@bindir@
-libdir=@libdir@
-includedir=@includedir@
-docdir=@exec_prefix@/doc
+prefix=$(DESTDIR)@prefix@
+exec_prefix=$(DESTDIR)@exec_prefix@
+bindir=$(DESTDIR)@bindir@
+libdir=$(DESTDIR)@libdir@
+includedir=$(DESTDIR)@includedir@
+docdir=$(DESTDIR)@exec_prefix@/doc
PUB_LIB=$(LIB)
--- hdf5-1.6.4/c++/config/commence.in.BAD 2005-04-03 14:07:10.000000000 -0500
+++ hdf5-1.6.4/c++/config/commence.in 2005-04-03 14:07:35.000000000 -0500
@@ -32,11 +32,11 @@
TRACE=:
## Installation points
-prefix=@prefix@
-exec_prefix=@exec_prefix@
-bindir=@bindir@
-libdir=@libdir@
-includedir=@includedir@
-docdir=@exec_prefix@/doc
+prefix=$(DESTDIR)@prefix@
+exec_prefix=$(DESTDIR)@exec_prefix@
+bindir=$(DESTDIR)@bindir@
+libdir=$(DESTDIR)@libdir@
+includedir=$(DESTDIR)@includedir@
+docdir=$(DESTDIR)@exec_prefix@/doc
PUB_LIB=$(LIB)

15
hdf5-1.6.4-gcc4.patch
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--- hdf5-1.6.4/fortran/config/linux-gnulibc1.BAD 2005-04-03 12:55:55.000000000 -0500
+++ hdf5-1.6.4/fortran/config/linux-gnulibc1 2005-04-03 12:56:50.000000000 -0500
@@ -25,7 +25,11 @@
# The default Fortran 90 compiler
if test "X-" = "X-$F9X"; then
case $CC_BASENAME in
- gcc*|pgcc*)
+ gcc*)
+ F9X=gfortran
+ F9X_BASENAME=gfortran
+ ;;
+ pgcc*)
F9X=pgf90
F9X_BASENAME=pgf90
;;

81
hdf5-1.6.4-h5diff_attr.patch
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--- hdf5-1.6.4/tools/lib/h5diff_attr.c.orig 2005-07-01 08:47:12.000000000 -0600
+++ hdf5-1.6.4/tools/lib/h5diff_attr.c 2005-07-01 09:01:59.000000000 -0600
@@ -61,8 +61,8 @@
int rank2; /* rank of dataset */
hsize_t dims1[H5S_MAX_RANK];/* dimensions of dataset */
hsize_t dims2[H5S_MAX_RANK];/* dimensions of dataset */
- char name1[255];
- char name2[255];
+ char name1[255],np1[512];
+ char name2[255],np2[512];
int n1, n2, i, j;
int ret=0;
hsize_t nfound;
@@ -191,21 +191,21 @@
* array compare
*-------------------------------------------------------------------------
*/
- sprintf(name1,"%s of <%s>",name1,path1);
- sprintf(name2,"%s of <%s>",name2,path2);
+ snprintf(np1,sizeof(np1),"%s of <%s>",name1,path1);
+ snprintf(np2,sizeof(np2),"%s of <%s>",name2,path2);
/* always print name */
if (options->m_verbose)
{
- printf( "Attribute: <%s> and <%s>\n",name1,name2);
+ printf( "Attribute: <%s> and <%s>\n",np1,np2);
nfound = diff_array(buf1,
buf2,
nelmts1,
rank1,
dims1,
options,
- name1,
- name2,
+ np1,
+ np2,
mtype1_id,
attr1_id,
attr2_id);
@@ -225,8 +225,8 @@
rank1,
dims1,
options,
- name1,
- name2,
+ np1,
+ np2,
mtype1_id,
attr1_id,
attr2_id);
@@ -234,15 +234,15 @@
options->m_quiet=0;
if (nfound)
{
- printf( "Attribute: <%s> and <%s>\n",name1,name2);
+ printf( "Attribute: <%s> and <%s>\n",np1,np2);
nfound = diff_array(buf1,
buf2,
nelmts1,
rank1,
dims1,
options,
- name1,
- name2,
+ np1,
+ np2,
mtype1_id,
attr1_id,
attr2_id);
@@ -258,8 +258,8 @@
rank1,
dims1,
options,
- name1,
- name2,
+ np1,
+ np2,
mtype1_id,
attr1_id,
attr2_id);

46
hdf5-1.6.4-norpath.patch
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--- hdf5-1.6.4/config/commence.in.BAD 2005-04-03 18:55:35.000000000 -0500
+++ hdf5-1.6.4/config/commence.in 2005-04-03 18:55:54.000000000 -0500
@@ -48,8 +48,8 @@
DYNAMIC_DIRS=@DYNAMIC_DIRS@
LT=$(top_builddir)/libtool
LT_COMPILE=$(LT) --mode=compile $(CC)
LT_LINK_LIB=$(LT) --mode=link $(CC) -rpath $(libdir) $(DYNAMIC_DIRS)
-LT_LINK_EXE=$(LT) --mode=link $(CC) $(LT_STATIC_EXEC) -dlopen self -rpath $(libdir) $(DYNAMIC_DIRS)
+LT_LINK_EXE=$(LT) --mode=link $(CC) $(LT_STATIC_EXEC) -dlopen self $(DYNAMIC_DIRS)
LT_RUN=$(LT) --mode=execute
LT_INSTALL_PROG=$(LT) --mode=install $(INSTALL_PROGRAM)
LT_INSTALL_LIB=$(LT) --mode=install $(INSTALL_DATA)
--- hdf5-1.6.4/aclocal.m4.BAD 2005-04-03 18:53:47.000000000 -0500
+++ hdf5-1.6.4/aclocal.m4 2005-04-03 18:54:13.000000000 -0500
@@ -1383,7 +1383,7 @@
if test "$ld_shlibs" = yes; then
runpath_var=LD_RUN_PATH
- hardcode_libdir_flag_spec='${wl}--rpath ${wl}$libdir'
+ hardcode_libdir_flag_spec=''
export_dynamic_flag_spec='${wl}--export-dynamic'
case $host_os in
cygwin* | mingw* | pw32*)
--- hdf5-1.6.4/c++/config/commence.in.BAD 2005-04-03 18:55:05.000000000 -0500
+++ hdf5-1.6.4/c++/config/commence.in 2005-04-03 18:55:25.000000000 -0500
@@ -50,8 +50,8 @@
DYNAMIC_DIRS=@DYNAMIC_DIRS@
LT=$(top_builddir)/libtool
LT_COMPILE=$(LT) --mode=compile $(CXX)
LT_LINK_LIB=$(LT) --mode=link $(CXX) -static -rpath $(libdir) $(DYNAMIC_DIRS)
-LT_LINK_EXE=$(LT) --mode=link $(CXX) -static $(LT_STATIC_EXEC) -dlopen self -rpath $(bindir) $(DYNAMIC_DIRS)
+LT_LINK_EXE=$(LT) --mode=link $(CXX) -static $(LT_STATIC_EXEC) -dlopen self $(DYNAMIC_DIRS)
LT_RUN=$(LT) --mode=execute
LT_INSTALL_PROG=$(LT) --mode=install $(INSTALL_PROGRAM)
LT_INSTALL_LIB=$(LT) --mode=install $(INSTALL_DATA)
--- hdf5-1.6.4/fortran/config/commence.in.BAD 2005-04-03 20:05:38.000000000 -0500
+++ hdf5-1.6.4/fortran/config/commence.in 2005-04-03 20:05:48.000000000 -0500
@@ -54,7 +54,7 @@
LT=$(top_builddir)/libtool
LT_CCOMPILE=$(LT) --mode=compile $(CC)
LT_LINK_CLIB=$(LT) --mode=link $(CC) $(DYNAMIC_DIRS) $(LT_STATIC_EXEC) -rpath $(libdir)
-LT_LINK_CEXE=$(LT) --mode=link $(CC) $(DYNAMIC_DIRS) -rpath $(bindir)
+LT_LINK_CEXE=$(LT) --mode=link $(CC) $(DYNAMIC_DIRS)
LT_RUN=$(LT) --mode=execute
LT_INSTALL_PROG=$(LT) --mode=install $(INSTALL_PROGRAM)
LT_INSTALL_LIB=$(LT) --mode=install $(INSTALL_DATA)

11
hdf5-1.6.4-testh5repack.patch
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--- hdf5-1.6.4/tools/h5repack/testh5repack_make.c.bad 2005-06-30 14:50:32.000000000 -0600
+++ hdf5-1.6.4/tools/h5repack/testh5repack_make.c 2005-06-30 14:45:48.000000000 -0600
@@ -896,7 +896,7 @@
hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
int buf[DIM1][DIM2];
int i, j, n;
- char name[5];
+ char name[6];
for (i=n=0; i<DIM1; i++){

109
hdf5.spec
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Name: hdf5
Version: 1.6.4
Release: 4%{?dist}
Summary: A general purpose library and file format for storing scientific data
License: BSD-ish
Group: System Environment/Libraries
URL: http://hdf.ncsa.uiuc.edu/HDF5/
Source0: ftp://ftp.ncsa.uiuc.edu/HDF/HDF5/current/src/%{name}-%{version}.tar.gz
Patch0: hdf5-1.6.4-gcc4.patch
Patch1: hdf5-1.6.4-destdir.patch
Patch2: hdf5-1.6.4-norpath.patch
Patch3: hdf5-1.6.4-testh5repack.patch
Patch4: hdf5-1.6.4-h5diff_attr.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildRequires: krb5-devel, openssl-devel, zlib-devel
%description
HDF5 is a general purpose library and file format for storing scientific data.
HDF5 can store two primary objects: datasets and groups. A dataset is
essentially a multidimensional array of data elements, and a group is a
structure for organizing objects in an HDF5 file. Using these two basic
objects, one can create and store almost any kind of scientific data
structure, such as images, arrays of vectors, and structured and unstructured
grids. You can also mix and match them in HDF5 files according to your needs.
%package devel
Summary: HDF5 development files
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}
%description devel
HDF5 development headers and libraries.
%prep
%setup -q
%patch0 -p1
%patch1 -p1
%patch2 -p1
%patch3 -p1
%patch4 -p1
%build
autoconf
# the Fortran parts are hitting GCC bug 17917, add --enable-fortran when it gets fixed.
%configure --with-ssl --enable-cxx --enable-threadsafe --with-pthread
make
%install
rm -rf $RPM_BUILD_ROOT
find doc/html -type f | xargs chmod -x
find doc/html -name '*.sh*' | xargs chmod +x
%makeinstall docdir=${RPM_BUILD_ROOT}%{_docdir}
rm -rf $RPM_BUILD_ROOT/%{_libdir}/*.la $RPM_BUILD_ROOT/%{_libdir}/*.settings
%check
make check
%clean
rm -rf $RPM_BUILD_ROOT
%post -p /sbin/ldconfig
%postun -p /sbin/ldconfig
%files
%defattr(-,root,root,0755)
%doc COPYING MANIFEST README.txt release_docs/RELEASE.txt
%doc release_docs/HISTORY.txt doc/html
%{_bindir}/gif2h5
%{_bindir}/h52gif
%{_bindir}/h5c++
%{_bindir}/h5cc
%{_bindir}/h5debug
%{_bindir}/h5diff
%{_bindir}/h5dump
%{_bindir}/h5import
%{_bindir}/h5jam
%{_bindir}/h5ls
%{_bindir}/h5redeploy
%{_bindir}/h5repack
%{_bindir}/h5repart
%{_bindir}/h5unjam
%{_libdir}/*.so.*
%files devel
%defattr(-,root,root,0755)
%{_docdir}/%{name}/examples/c++
%{_docdir}/%{name}/examples/c
%{_includedir}/*.h
%{_libdir}/*.a
%{_libdir}/*.so
%changelog
* Tue Jul 05 2005 Orion Poplawski <orion@cora.nwra.com> 1.6.4-4
- Make example scripts executable
* Wed Jul 01 2005 Orion Poplawski <orion@cora.nwra.com> 1.6.4-3
- Add --enable-threads --with-pthreads to configure
- Add %check
- Add some %docs
- Use %makeinstall
- Add patch to fix test for h5repack
- Add patch to fix h5diff_attr.c
* Mon Jun 27 2005 Tom "spot" Callaway <tcallawa@redhat.com> 1.6.4-2
- remove szip from spec, since szip license doesn't meet Fedora standards
* Sun Apr 3 2005 Tom "spot" Callaway <tcallawa@redhat.com> 1.6.4-1
- inital package for Fedora Extras

1
sources
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a837391b633fc4c6681905d89047c032 hdf5-1.6.4.tar.gz
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