Orion Poplawski
20 years ago
parent
49212e8f72
commit
b5174ee468
@ -0,0 +1 @@
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hdf5-1.6.4.tar.gz
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@ -0,0 +1,60 @@
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--- hdf5-1.6.4/config/commence.in.BAD 2005-04-03 13:52:00.000000000 -0500
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+++ hdf5-1.6.4/config/commence.in 2005-04-03 13:52:53.000000000 -0500
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@@ -35,11 +35,11 @@
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TRACE=:
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## Installation points
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-prefix=@prefix@
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-exec_prefix=@exec_prefix@
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-bindir=@bindir@
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-libdir=@libdir@
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-includedir=@includedir@
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-docdir=@exec_prefix@/doc
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+prefix=$(DESTDIR)@prefix@
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+exec_prefix=$(DESTDIR)@exec_prefix@
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+bindir=$(DESTDIR)@bindir@
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+libdir=$(DESTDIR)@libdir@
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+includedir=$(DESTDIR)@includedir@
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+docdir=$(DESTDIR)@exec_prefix@/doc
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PUB_LIB=$(LIB)
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--- hdf5-1.6.4/fortran/config/commence.in.BAD 2005-04-03 14:08:27.000000000 -0500
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+++ hdf5-1.6.4/fortran/config/commence.in 2005-04-03 14:08:48.000000000 -0500
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@@ -40,11 +40,11 @@
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TRACE=:
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## Installation points
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-prefix=@prefix@
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-exec_prefix=@exec_prefix@
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-bindir=@bindir@
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-libdir=@libdir@
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-includedir=@includedir@
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-docdir=@exec_prefix@/doc
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+prefix=$(DESTDIR)@prefix@
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+exec_prefix=$(DESTDIR)@exec_prefix@
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+bindir=$(DESTDIR)@bindir@
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+libdir=$(DESTDIR)@libdir@
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+includedir=$(DESTDIR)@includedir@
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+docdir=$(DESTDIR)@exec_prefix@/doc
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PUB_LIB=$(LIB)
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--- hdf5-1.6.4/c++/config/commence.in.BAD 2005-04-03 14:07:10.000000000 -0500
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+++ hdf5-1.6.4/c++/config/commence.in 2005-04-03 14:07:35.000000000 -0500
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@@ -32,11 +32,11 @@
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TRACE=:
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## Installation points
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-prefix=@prefix@
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-exec_prefix=@exec_prefix@
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-bindir=@bindir@
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-libdir=@libdir@
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-includedir=@includedir@
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-docdir=@exec_prefix@/doc
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+prefix=$(DESTDIR)@prefix@
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+exec_prefix=$(DESTDIR)@exec_prefix@
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+bindir=$(DESTDIR)@bindir@
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+libdir=$(DESTDIR)@libdir@
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+includedir=$(DESTDIR)@includedir@
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+docdir=$(DESTDIR)@exec_prefix@/doc
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PUB_LIB=$(LIB)
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@ -0,0 +1,15 @@
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--- hdf5-1.6.4/fortran/config/linux-gnulibc1.BAD 2005-04-03 12:55:55.000000000 -0500
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+++ hdf5-1.6.4/fortran/config/linux-gnulibc1 2005-04-03 12:56:50.000000000 -0500
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@@ -25,7 +25,11 @@
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# The default Fortran 90 compiler
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if test "X-" = "X-$F9X"; then
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case $CC_BASENAME in
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- gcc*|pgcc*)
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+ gcc*)
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+ F9X=gfortran
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+ F9X_BASENAME=gfortran
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+ ;;
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+ pgcc*)
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F9X=pgf90
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F9X_BASENAME=pgf90
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;;
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@ -0,0 +1,81 @@
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--- hdf5-1.6.4/tools/lib/h5diff_attr.c.orig 2005-07-01 08:47:12.000000000 -0600
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+++ hdf5-1.6.4/tools/lib/h5diff_attr.c 2005-07-01 09:01:59.000000000 -0600
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@@ -61,8 +61,8 @@
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int rank2; /* rank of dataset */
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hsize_t dims1[H5S_MAX_RANK];/* dimensions of dataset */
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hsize_t dims2[H5S_MAX_RANK];/* dimensions of dataset */
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- char name1[255];
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- char name2[255];
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+ char name1[255],np1[512];
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+ char name2[255],np2[512];
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int n1, n2, i, j;
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int ret=0;
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hsize_t nfound;
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@@ -191,21 +191,21 @@
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* array compare
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*-------------------------------------------------------------------------
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*/
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- sprintf(name1,"%s of <%s>",name1,path1);
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- sprintf(name2,"%s of <%s>",name2,path2);
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+ snprintf(np1,sizeof(np1),"%s of <%s>",name1,path1);
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+ snprintf(np2,sizeof(np2),"%s of <%s>",name2,path2);
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/* always print name */
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if (options->m_verbose)
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{
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- printf( "Attribute: <%s> and <%s>\n",name1,name2);
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+ printf( "Attribute: <%s> and <%s>\n",np1,np2);
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nfound = diff_array(buf1,
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buf2,
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nelmts1,
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rank1,
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dims1,
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options,
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- name1,
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- name2,
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+ np1,
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+ np2,
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mtype1_id,
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attr1_id,
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attr2_id);
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@@ -225,8 +225,8 @@
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rank1,
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dims1,
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options,
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- name1,
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- name2,
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+ np1,
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+ np2,
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mtype1_id,
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attr1_id,
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attr2_id);
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@@ -234,15 +234,15 @@
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options->m_quiet=0;
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if (nfound)
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{
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- printf( "Attribute: <%s> and <%s>\n",name1,name2);
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+ printf( "Attribute: <%s> and <%s>\n",np1,np2);
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nfound = diff_array(buf1,
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buf2,
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nelmts1,
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rank1,
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dims1,
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options,
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- name1,
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- name2,
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+ np1,
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+ np2,
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mtype1_id,
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attr1_id,
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attr2_id);
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@@ -258,8 +258,8 @@
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rank1,
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dims1,
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options,
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- name1,
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- name2,
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+ np1,
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+ np2,
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mtype1_id,
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attr1_id,
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attr2_id);
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@ -0,0 +1,46 @@
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--- hdf5-1.6.4/config/commence.in.BAD 2005-04-03 18:55:35.000000000 -0500
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+++ hdf5-1.6.4/config/commence.in 2005-04-03 18:55:54.000000000 -0500
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@@ -48,8 +48,8 @@
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DYNAMIC_DIRS=@DYNAMIC_DIRS@
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LT=$(top_builddir)/libtool
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LT_COMPILE=$(LT) --mode=compile $(CC)
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LT_LINK_LIB=$(LT) --mode=link $(CC) -rpath $(libdir) $(DYNAMIC_DIRS)
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-LT_LINK_EXE=$(LT) --mode=link $(CC) $(LT_STATIC_EXEC) -dlopen self -rpath $(libdir) $(DYNAMIC_DIRS)
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+LT_LINK_EXE=$(LT) --mode=link $(CC) $(LT_STATIC_EXEC) -dlopen self $(DYNAMIC_DIRS)
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LT_RUN=$(LT) --mode=execute
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LT_INSTALL_PROG=$(LT) --mode=install $(INSTALL_PROGRAM)
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LT_INSTALL_LIB=$(LT) --mode=install $(INSTALL_DATA)
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--- hdf5-1.6.4/aclocal.m4.BAD 2005-04-03 18:53:47.000000000 -0500
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+++ hdf5-1.6.4/aclocal.m4 2005-04-03 18:54:13.000000000 -0500
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@@ -1383,7 +1383,7 @@
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if test "$ld_shlibs" = yes; then
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runpath_var=LD_RUN_PATH
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- hardcode_libdir_flag_spec='${wl}--rpath ${wl}$libdir'
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+ hardcode_libdir_flag_spec=''
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export_dynamic_flag_spec='${wl}--export-dynamic'
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case $host_os in
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cygwin* | mingw* | pw32*)
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--- hdf5-1.6.4/c++/config/commence.in.BAD 2005-04-03 18:55:05.000000000 -0500
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+++ hdf5-1.6.4/c++/config/commence.in 2005-04-03 18:55:25.000000000 -0500
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@@ -50,8 +50,8 @@
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DYNAMIC_DIRS=@DYNAMIC_DIRS@
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LT=$(top_builddir)/libtool
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LT_COMPILE=$(LT) --mode=compile $(CXX)
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LT_LINK_LIB=$(LT) --mode=link $(CXX) -static -rpath $(libdir) $(DYNAMIC_DIRS)
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-LT_LINK_EXE=$(LT) --mode=link $(CXX) -static $(LT_STATIC_EXEC) -dlopen self -rpath $(bindir) $(DYNAMIC_DIRS)
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+LT_LINK_EXE=$(LT) --mode=link $(CXX) -static $(LT_STATIC_EXEC) -dlopen self $(DYNAMIC_DIRS)
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LT_RUN=$(LT) --mode=execute
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LT_INSTALL_PROG=$(LT) --mode=install $(INSTALL_PROGRAM)
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LT_INSTALL_LIB=$(LT) --mode=install $(INSTALL_DATA)
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--- hdf5-1.6.4/fortran/config/commence.in.BAD 2005-04-03 20:05:38.000000000 -0500
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+++ hdf5-1.6.4/fortran/config/commence.in 2005-04-03 20:05:48.000000000 -0500
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@@ -54,7 +54,7 @@
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LT=$(top_builddir)/libtool
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LT_CCOMPILE=$(LT) --mode=compile $(CC)
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LT_LINK_CLIB=$(LT) --mode=link $(CC) $(DYNAMIC_DIRS) $(LT_STATIC_EXEC) -rpath $(libdir)
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-LT_LINK_CEXE=$(LT) --mode=link $(CC) $(DYNAMIC_DIRS) -rpath $(bindir)
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+LT_LINK_CEXE=$(LT) --mode=link $(CC) $(DYNAMIC_DIRS)
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LT_RUN=$(LT) --mode=execute
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LT_INSTALL_PROG=$(LT) --mode=install $(INSTALL_PROGRAM)
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LT_INSTALL_LIB=$(LT) --mode=install $(INSTALL_DATA)
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@ -0,0 +1,11 @@
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--- hdf5-1.6.4/tools/h5repack/testh5repack_make.c.bad 2005-06-30 14:50:32.000000000 -0600
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+++ hdf5-1.6.4/tools/h5repack/testh5repack_make.c 2005-06-30 14:45:48.000000000 -0600
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@@ -896,7 +896,7 @@
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hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
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int buf[DIM1][DIM2];
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int i, j, n;
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- char name[5];
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+ char name[6];
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for (i=n=0; i<DIM1; i++){
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@ -0,0 +1,109 @@
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Name: hdf5
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Version: 1.6.4
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Release: 4%{?dist}
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Summary: A general purpose library and file format for storing scientific data
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License: BSD-ish
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Group: System Environment/Libraries
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URL: http://hdf.ncsa.uiuc.edu/HDF5/
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Source0: ftp://ftp.ncsa.uiuc.edu/HDF/HDF5/current/src/%{name}-%{version}.tar.gz
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Patch0: hdf5-1.6.4-gcc4.patch
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Patch1: hdf5-1.6.4-destdir.patch
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Patch2: hdf5-1.6.4-norpath.patch
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Patch3: hdf5-1.6.4-testh5repack.patch
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Patch4: hdf5-1.6.4-h5diff_attr.patch
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRequires: krb5-devel, openssl-devel, zlib-devel
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%description
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HDF5 is a general purpose library and file format for storing scientific data.
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HDF5 can store two primary objects: datasets and groups. A dataset is
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essentially a multidimensional array of data elements, and a group is a
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structure for organizing objects in an HDF5 file. Using these two basic
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objects, one can create and store almost any kind of scientific data
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structure, such as images, arrays of vectors, and structured and unstructured
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grids. You can also mix and match them in HDF5 files according to your needs.
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%package devel
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Summary: HDF5 development files
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Group: Development/Libraries
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Requires: %{name} = %{version}-%{release}
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%description devel
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HDF5 development headers and libraries.
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%prep
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%setup -q
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%patch0 -p1
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%patch1 -p1
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%patch2 -p1
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%patch3 -p1
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%patch4 -p1
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%build
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autoconf
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# the Fortran parts are hitting GCC bug 17917, add --enable-fortran when it gets fixed.
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%configure --with-ssl --enable-cxx --enable-threadsafe --with-pthread
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make
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%install
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rm -rf $RPM_BUILD_ROOT
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find doc/html -type f | xargs chmod -x
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find doc/html -name '*.sh*' | xargs chmod +x
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%makeinstall docdir=${RPM_BUILD_ROOT}%{_docdir}
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rm -rf $RPM_BUILD_ROOT/%{_libdir}/*.la $RPM_BUILD_ROOT/%{_libdir}/*.settings
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%check
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make check
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%clean
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rm -rf $RPM_BUILD_ROOT
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%post -p /sbin/ldconfig
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%postun -p /sbin/ldconfig
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%files
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%defattr(-,root,root,0755)
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%doc COPYING MANIFEST README.txt release_docs/RELEASE.txt
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%doc release_docs/HISTORY.txt doc/html
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%{_bindir}/gif2h5
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%{_bindir}/h52gif
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%{_bindir}/h5c++
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%{_bindir}/h5cc
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%{_bindir}/h5debug
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%{_bindir}/h5diff
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%{_bindir}/h5dump
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%{_bindir}/h5import
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%{_bindir}/h5jam
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%{_bindir}/h5ls
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%{_bindir}/h5redeploy
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%{_bindir}/h5repack
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%{_bindir}/h5repart
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%{_bindir}/h5unjam
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%{_libdir}/*.so.*
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%files devel
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%defattr(-,root,root,0755)
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%{_docdir}/%{name}/examples/c++
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%{_docdir}/%{name}/examples/c
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%{_includedir}/*.h
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%{_libdir}/*.a
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%{_libdir}/*.so
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%changelog
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* Tue Jul 05 2005 Orion Poplawski <orion@cora.nwra.com> 1.6.4-4
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- Make example scripts executable
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* Wed Jul 01 2005 Orion Poplawski <orion@cora.nwra.com> 1.6.4-3
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- Add --enable-threads --with-pthreads to configure
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- Add %check
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- Add some %docs
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- Use %makeinstall
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- Add patch to fix test for h5repack
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- Add patch to fix h5diff_attr.c
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* Mon Jun 27 2005 Tom "spot" Callaway <tcallawa@redhat.com> 1.6.4-2
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- remove szip from spec, since szip license doesn't meet Fedora standards
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* Sun Apr 3 2005 Tom "spot" Callaway <tcallawa@redhat.com> 1.6.4-1
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- inital package for Fedora Extras
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Loading…
Reference in new issue