Updated to new CharLs version

gdcm-2.0.16-JlsParameters.patch

@@ -0,0 +1,58 @@
+diff --git a/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx b/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
+index 4d38bef..48a52ac 100644
+--- a/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
++++ b/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
+@@ -72,7 +72,7 @@ bool JPEGLSCodec::GetHeaderInfo(std::istream &is, TransferSyntax &ts)
+   is.seekg(0, std::ios::beg);
+   is.read( dummy_buffer, buf_size);
+ 
+-  JlsParamaters metadata;
++  JlsParameters metadata;
+   if (JpegLsReadHeader(dummy_buffer, buf_size, &metadata) != OK)
+     {
+     return false;
+@@ -160,7 +160,7 @@ bool JPEGLSCodec::Decode(DataElement const &in, DataElement &out)
+     sf->GetBuffer(buffer, totalLen);
+     //is.write(buffer, totalLen);
+ 
+-    JlsParamaters metadata;
++    JlsParameters metadata;
+     if (JpegLsReadHeader(buffer, totalLen, &metadata) != OK)
+       {
+       return false;
+@@ -172,7 +172,7 @@ bool JPEGLSCodec::Decode(DataElement const &in, DataElement &out)
+     const BYTE* pbyteCompressed = (const BYTE*)buffer;
+     int cbyteCompressed = totalLen;
+ 
+-    JlsParamaters params = {0};
++    JlsParameters params = {0};
+     JpegLsReadHeader(pbyteCompressed, cbyteCompressed, &params);
+ 
+     std::vector<BYTE> rgbyteCompressed;
+@@ -216,7 +216,7 @@ bool JPEGLSCodec::Decode(DataElement const &in, DataElement &out)
+   // what if 0xd9 is never found ?
+   assert( totalLen > 0 && pbyteCompressed[totalLen-1] == 0xd9 );
+ 
+-    JlsParamaters metadata;
++    JlsParameters metadata;
+     if (JpegLsReadHeader(mybuffer, totalLen, &metadata) != OK)
+       {
+       return false;
+@@ -228,7 +228,7 @@ bool JPEGLSCodec::Decode(DataElement const &in, DataElement &out)
+ 
+     int cbyteCompressed = totalLen;
+ 
+-    JlsParamaters params = {0};
++    JlsParameters params = {0};
+     JpegLsReadHeader(pbyteCompressed, cbyteCompressed, &params);
+ 
+     std::vector<BYTE> rgbyteCompressed;
+@@ -293,7 +293,7 @@ bool JPEGLSCodec::Code(DataElement const &in, DataElement &out)
+     {
+     const char *inputdata = input + dim * image_len; //bv->GetPointer();
+ 
+-    JlsParamaters params = {};
++    JlsParameters params = {};
+ /*
+ The fields in JlsCustomParameters do not control lossy/lossless. They
+ provide the possiblity to tune the JPEG-LS internals for better compression

gdcm-2.0.16-fix-decode.patch

@@ -0,0 +1,22 @@
+diff --git a/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx b/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
+index d51832f..4d38bef 100644
+--- a/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
++++ b/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
+@@ -181,7 +181,7 @@ bool JPEGLSCodec::Decode(DataElement const &in, DataElement &out)
+     std::vector<BYTE> rgbyteOut;
+     rgbyteOut.resize(params.height *params.width * ((params.bitspersample + 7) / 8) * params.components);
+ 
+-    JLS_ERROR result = JpegLsDecode(&rgbyteOut[0], rgbyteOut.size(), pbyteCompressed, cbyteCompressed);
++    JLS_ERROR result = JpegLsDecode(&rgbyteOut[0], rgbyteOut.size(), pbyteCompressed, cbyteCompressed, &params);
+     ASSERT(result == OK);
+ 
+     delete[] buffer;
+@@ -237,7 +237,7 @@ bool JPEGLSCodec::Decode(DataElement const &in, DataElement &out)
+     std::vector<BYTE> rgbyteOut;
+     rgbyteOut.resize(params.height *params.width * ((params.bitspersample + 7) / 8) * params.components);
+ 
+-    JLS_ERROR result = JpegLsDecode(&rgbyteOut[0], rgbyteOut.size(), pbyteCompressed, cbyteCompressed);
++    JLS_ERROR result = JpegLsDecode(&rgbyteOut[0], rgbyteOut.size(), pbyteCompressed, cbyteCompressed, &params);
+     ASSERT(result == OK);
+ bool r = true;
+ 

gdcm-2.0.16-remove-stdafx.patch

@@ -0,0 +1,13 @@
+diff --git a/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx b/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
+index a44a2b1..d51832f 100644
+--- a/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
++++ b/Source/MediaStorageAndFileFormat/gdcmJPEGLSCodec.cxx
+@@ -19,7 +19,7 @@
+ 
+ // CharLS includes
+ #ifdef GDCM_USE_SYSTEM_EXPAT
+-#include "CharLS/stdafx.h" // sigh...
++//#include "CharLS/stdafx.h" // sigh...
+ #include "CharLS/interface.h"
+ #include "CharLS/util.h"
+ #include "CharLS/defaulttraits.h"

gdcm.spec

@@ -11,7 +11,7 @@
 
 Name:		gdcm
 Version:	2.0.16
-Release:	12%{?dist}
+Release:	13%{?dist}
 Summary:	Grassroots DiCoM is a C++ library to parse DICOM medical files
 Group:		Development/Libraries
 License:	BSD
@@ -29,6 +29,9 @@ Patch3: gdcm-2.0.14-use_system_charls.patch
 Patch4: gdcm-2.0.16-fix_dso_link.patch
 Patch5: gdcm-2.0.16-remove_versioned_install_dir.patch
 Patch6: gdcm-2.0.16-fix_ptrdiff.patch
+Patch7: gdcm-2.0.16-remove-stdafx.patch
+Patch8: gdcm-2.0.16-fix-decode.patch
+Patch9: gdcm-2.0.16-JlsParameters.patch
 
 BuildRequires:	cmake >= 2.6.0
 BuildRequires:	openssl-devel
@@ -39,7 +42,7 @@ BuildRequires:	poppler-devel
 BuildRequires:	mesa-libOSMesa-devel
 BuildRequires:	fontconfig-devel
 BuildRequires:	doxygen
-BuildRequires:	CharLS-devel
+BuildRequires:	CharLS-devel >= 1.0
 BuildRequires:	texlive-latex
 BuildRequires:	graphviz
 BuildRequires:	python2-devel
@@ -86,6 +89,9 @@ used this library with python
 %patch4 -p1
 %patch5
 %patch6 -p2
+%patch7 -p1
+%patch8 -p1
+%patch9 -p1
 
 # Remove bundled utilities (we use Fedora's ones)
 
@@ -185,16 +191,19 @@ ctest .
 #%{python_sitelib}/*
 
 %changelog
+* Mon Feb 14 2011 Mario Ceresa <mrceresa@gmail.com> - 2.0.16-13
+- Adapted to new version of CharLS lib (v 1.0)
+
 * Tue Feb 08 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.0.16-12
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
 
-* Mon Feb 2 2011 Mario Ceresa <mrceresa@gmail.com> 2.0.16-11
+* Mon Feb 02 2011 Mario Ceresa <mrceresa@gmail.com> - 2.0.16-11
 - Removed python bindings because they fail to build with gcc 4.6
 
-* Mon Feb 2 2011 Mario Ceresa <mrceresa@gmail.com> 2.0.16-10
+* Mon Feb 02 2011 Mario Ceresa <mrceresa@gmail.com> - 2.0.16-10
 - Added patch to fix upstream bug #3169784
 
-* Sun Jan 02 2011 Rex Dieter <rdieter@fedoraproject.org> - 2.0.16-9
+* Sun Jan 02 2011 Rex Dieter <rdieter@fedoraproject.org> - 2.0.16-11
 - rebuild (poppler)
 
 * Wed Dec 15 2010 Rex Dieter <rdieter@fedoraproject.org> - 2.0.16-8