rpms
/
SuperLU
21
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Update to 5.2.1

Browse Source 
- Resolves #1547494
- Use cmake

Signed-off-by: Rafael dos Santos <rdossant@redhat.com>
epel9
Rafael dos Santos 7 years ago
parent a03544884e
commit c064ebb380
13 changed files with 2693 additions and 277 deletions
Show Stats Download Patch File Download Diff File

1
.gitignore vendored
Unescape View File

@ -1,3 +1,4 @@
/superlu_4.3.tar.gz
/superlu_5.1.1.tar.gz
/superlu_5.2.0.tar.gz
/superlu_5.2.1.tar.gz

13
SuperLU-add-fpic.patch
Unescape View File

@ -1,13 +0,0 @@
diff -up SuperLU_4.3/MAKE_INC/make.linux.fpic SuperLU_4.3/MAKE_INC/make.linux
--- SuperLU_4.3/MAKE_INC/make.linux.fpic 2012-01-06 10:39:58.474356562 +0530
+++ SuperLU_4.3/MAKE_INC/make.linux 2012-01-06 10:40:59.933356590 +0530
@@ -46,7 +46,8 @@ ARCHFLAGS = cr
RANLIB = ranlib
CC = gcc
-CFLAGS = -O3
+FPIC = -fPIC
+CFLAGS = -O3 $(FPIC)
NOOPTS =
FORTRAN = g77
FFLAGS = -O2

39
SuperLU-build-shared-lib3.patch
Unescape View File

@ -1,39 +0,0 @@
diff -up SuperLU_4.3/SRC/Makefile.fix SuperLU_4.3/SRC/Makefile
--- SuperLU_4.3/SRC/Makefile.fix 2012-02-01 17:15:17.711698876 +0530
+++ SuperLU_4.3/SRC/Makefile 2012-02-01 17:17:07.794698927 +0530
@@ -111,7 +111,7 @@ ZLUSRC = \
ilu_zcolumn_dfs.o ilu_zpanel_dfs.o ilu_zcopy_to_ucol.o \
ilu_zpivotL.o zdiagonal.o
-all: single double complex complex16
+all: sharedlib
single: $(SLUSRC) $(ALLAUX) $(LAAUX) $(SLASRC) $(SCLAUX)
$(ARCH) $(ARCHFLAGS) $(SUPERLULIB) \
@@ -133,17 +133,22 @@ complex16: $(ZLUSRC) $(ALLAUX) $(LAAUX)
$(ZLUSRC) $(ALLAUX) $(LAAUX) $(ZLASRC) $(DZLAUX)
$(RANLIB) $(SUPERLULIB)
+sharedlib: $(ALLAUX) $(LAAUX) $(SLASRC) $(DLASRC) $(CLASRC) $(ZLASRC) $(SCLAUX) $(DZLAUX) $(SLUSRC) $(DLUSRC) $(CLUSRC) $(ZLUSRC)
+ $(CC) $(CFLAGS) $(LIBS) -shared -Wl,-soname,libsuperlu.so.4.3 -o libsuperlu.so.4.3 \
+ $(ALLAUX) $(LAAUX) $(SLASRC) $(DLASRC) $(CLASRC) $(ZLASRC) $(SCLAUX) \
+ $(DZLAUX) $(SLUSRC) $(DLUSRC) $(CLUSRC) $(ZLUSRC)
+ ln -sf libsuperlu.so.4.3 libsuperlu.so
##################################
# Do not optimize these routines #
##################################
-slamch.o: slamch.c ; $(CC) -c $(NOOPTS) $(CDEFS) $<
-dlamch.o: dlamch.c ; $(CC) -c $(NOOPTS) $(CDEFS) $<
-superlu_timer.o: superlu_timer.c ; $(CC) -c $(NOOPTS) $<
+slamch.o: slamch.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $(CDEFS) $<
+dlamch.o: dlamch.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $(CDEFS) $<
+superlu_timer.o: superlu_timer.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $<
##################################
.c.o:
- $(CC) $(CFLAGS) $(CDEFS) $(BLASDEF) -c $< $(VERBOSE)
+ $(CC) $(CFLAGS) $(CDEFS) $(BLASDEF) $(LIBS) -c $< $(VERBOSE)
.f.o:
$(FORTRAN) $(FFLAGS) -c $<

13
SuperLU-fix-format-security.patch
Unescape View File

@ -1,13 +0,0 @@
Index: SuperLU_4.3/SRC/util.c
===================================================================
--- SuperLU_4.3.orig/SRC/util.c
+++ SuperLU_4.3/SRC/util.c
@@ -29,7 +29,7 @@
void superlu_abort_and_exit(char* msg)
{
- fprintf(stderr, msg);
+ fputs(stderr, msg);
exit (-1);
}

52
SuperLU-fix-testsuite.patch
Unescape View File

@ -1,52 +0,0 @@
Index: SuperLU_4.3/TESTING/Makefile
===================================================================
--- SuperLU_4.3.orig/TESTING/Makefile
+++ SuperLU_4.3/TESTING/Makefile
@@ -52,9 +52,9 @@ testmat:
single: ./stest stest.out
-./stest: $(SLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./stest: $(SLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(SLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
stest.out: stest stest.csh
@echo Testing SINGLE PRECISION linear equation routines
@@ -62,9 +62,9 @@ stest.out: stest stest.csh
double: ./dtest dtest.out
-./dtest: $(DLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./dtest: $(DLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(DLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
dtest.out: dtest dtest.csh
@echo Testing DOUBLE PRECISION linear equation routines
@@ -72,9 +72,9 @@ dtest.out: dtest dtest.csh
complex: ./ctest ctest.out
-./ctest: $(CLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./ctest: $(CLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(CLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
ctest.out: ctest ctest.csh
@echo Testing SINGLE COMPLEX linear equation routines
@@ -82,9 +82,9 @@ ctest.out: ctest ctest.csh
complex16: ./ztest ztest.out
-./ztest: $(ZLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./ztest: $(ZLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(ZLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
ztest.out: ztest ztest.csh
@echo Testing DOUBLE COMPLEX linear equation routines

67
SuperLU.spec
Unescape View File

@ -1,5 +1,5 @@
%global genname superlu
%global libver 5.1
%global libver 5
## The RPM macro for the linker flags does not exist on EPEL
%if 0%{?rhel} < 7
@ -7,24 +7,18 @@
%endif
Name: SuperLU
Version: 5.2.0
Release: 8%{?dist}
Version: 5.2.1
Release: 1%{?dist}
Summary: Subroutines to solve sparse linear systems
License: BSD and GPLV2+
URL: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/
Source0: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/%{genname}_%{version}.tar.gz
# Build with -fPIC
Patch0: %{genname}-5x-add-fpic.patch
# Build shared library
Patch1: %{genname}-5x-build-shared-lib3.patch
# Fixes testsuite
Patch3: %{genname}-5x-fix-testsuite.patch
# remove non-free mc64 functionality
# patch obtained from the debian package
Patch4: %{genname}-removemc64.patch
BuildRequires: atlas-devel, gcc
Patch0: %{genname}-cmake-includedir.patch
Patch1: %{genname}-removemc64.patch
BuildRequires: atlas-devel, gcc, cmake
BuildRequires: gcc-gfortran
BuildRequires: csh
%description
@ -50,11 +44,7 @@ The %{name}-doc package contains all the help documentation along with C
and FORTRAN examples.
%prep
%setup -q -n %{name}_%{version}
%patch0 -p1
%patch1 -p1
%patch3 -p1
%patch4
%autosetup -n %{name}_%{version} -p1
rm -fr SRC/mc64ad.f.bak
find . -type f | sed -e "/TESTING/d" | xargs chmod a-x
@ -63,46 +53,23 @@ find EXAMPLE -type f | while read file
do
[ "$(file $file | awk '{print $2}')" = ELF ] && rm $file || :
done
cp -p MAKE_INC/make.linux make.inc
sed -i -e "s|-O3|$RPM_OPT_FLAGS|" \
-e "s|\$(SUPERLULIB) ||" \
-e "s|\$(HOME)/Dropbox/Codes/%{name}/%{name}|%{_builddir}/%{name}_%{version}|" \
-e 's!lib/libsuperlu_5.1.a$!SRC/libsuperlu.so!' \
-e 's!-shared!& %{__global_ldflags}!' \
%if 0%{?rhel} && 0%{?rhel} < 7
-e "s|-L/usr/lib -lblas|-L%{_libdir}/atlas -lf77blas|" \
%else
-e "s|-L/usr/lib -lblas|-L%{_libdir}/atlas -lsatlas|" \
%endif
make.inc
%build
make %{?_smp_mflags} superlulib
make -C TESTING
%cmake .
%make_build
%install
mkdir -p %{buildroot}%{_libdir}
mkdir -p %{buildroot}%{_includedir}/%{name}
install -p SRC/libsuperlu.so.%{libver} %{buildroot}%{_libdir}
install -p SRC/*.h %{buildroot}%{_includedir}/%{name}
chmod -x %{buildroot}%{_includedir}/%{name}/*.h
cp -Pp SRC/libsuperlu.so %{buildroot}%{_libdir}
%make_install
%check
pushd TESTING
for _test in c d s z
do
chmod +x ${_test}test.csh
./${_test}test.csh
done
popd
ctest -V %{?_smp_mflags}
%ldconfig_scriptlets
%files
%doc README
%license License.txt
%{_libdir}/libsuperlu.so.%{libver}
%{_libdir}/libsuperlu.so.%{libver}*
%files devel
%{_includedir}/%{name}/
@ -112,6 +79,12 @@ popd
%doc DOC EXAMPLE FORTRAN
%changelog
* Fri Apr 13 2018 Rafael dos Santos <rdossant@redhat.com> - 5.2.1-1
- Update to 5.2.1
- Use cmake build system
- Drop obsolete patches
- Resolves #1547494 - build with standard Fedora flags
* Wed Feb 21 2018 Antonio Trande <sagitterATfedoraproject.org> - 5.2.0-8
- Add gcc BR
- Remove el5 bits

2
sources
Unescape View File

@ -1 +1 @@
ba3cfc93a93a8caed90bcf6f9b804ac7 superlu_5.2.0.tar.gz
SHA512 (superlu_5.2.1.tar.gz) = 30538b4c2809294b8f34646bce6445944f21a1dffaf3ec0a0f29a55d5261caa56e4279d7722bb95cc9d89450d36ded969617edc82ecce7d0f1dfb24040d80d07

12
superlu-5x-add-fpic.patch
Unescape View File

@ -1,12 +0,0 @@
--- SuperLU_5.1.1/MAKE_INC/make.linux.orig 2016-03-26 08:43:03.038994570 -0400
+++ SuperLU_5.1.1/MAKE_INC/make.linux 2016-03-26 08:44:09.141092611 -0400
@@ -46,7 +46,8 @@
RANLIB = ranlib
CC = gcc
-CFLAGS = -O3 -g
+FPIC = -fPIC
+CFLAGS = -O3 $(FPIC)
NOOPTS =
FORTRAN = gfortran #g77
FFLAGS = -O2 -g -fopenmp

39
superlu-5x-build-shared-lib3.patch
Unescape View File

@ -1,39 +0,0 @@
--- SuperLU_5.1.1/SRC/Makefile.orig 2016-03-26 08:47:18.885503561 -0400
+++ SuperLU_5.1.1/SRC/Makefile 2016-03-26 08:52:10.512497969 -0400
@@ -98,7 +98,7 @@
ilu_zcolumn_dfs.o ilu_zpanel_dfs.o ilu_zcopy_to_ucol.o \
ilu_zpivotL.o zdiagonal.o zlacon2.o dzsum1.o izmax1.o
-all: single double complex complex16
+all: sharedlib
single: $(SLUSRC) $(ALLAUX) $(SCAUX)
$(ARCH) $(ARCHFLAGS) $(SUPERLULIB) $(SLUSRC) $(ALLAUX) $(SCAUX)
@@ -116,17 +116,23 @@
$(ARCH) $(ARCHFLAGS) $(SUPERLULIB) $(ZLUSRC) $(ALLAUX) $(DZLAUX)
$(RANLIB) $(SUPERLULIB)
+sharedlib: $(ALLAUX) $(LAAUX) $(SLASRC) $(DLASRC) $(CLASRC) $(ZLASRC) $(SCLAUX) $(DZLAUX) $(SLUSRC) $(DLUSRC) $(CLUSRC) $(ZLUSRC)
+ $(CC) $(CFLAGS) $(LIBS) -shared -Wl,-soname,libsuperlu.so.5.1 -o libsuperlu.so.5.1 \
+ $(ALLAUX) $(LAAUX) $(SLASRC) $(DLASRC) $(CLASRC) $(ZLASRC) $(SCLAUX) \
+ $(DZLAUX) $(SLUSRC) $(DLUSRC) $(CLUSRC) $(ZLUSRC)
+ ln -sf libsuperlu.so.5.1 libsuperlu.so
+
##################################
# Do not optimize these routines #
##################################
-smach.o: smach.c ; $(CC) -c $(NOOPTS) $(CDEFS) $<
-dmach.o: dmach.c ; $(CC) -c $(NOOPTS) $(CDEFS) $<
-superlu_timer.o: superlu_timer.c ; $(CC) -c $(NOOPTS) $<
+slamch.o: slamch.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $(CDEFS) $<
+dlamch.o: dlamch.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $(CDEFS) $<
+superlu_timer.o: superlu_timer.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $<
##################################
.c.o:
- $(CC) $(CFLAGS) $(CDEFS) $(BLASDEF) -c $< $(VERBOSE)
+ $(CC) $(CFLAGS) $(CDEFS) $(BLASDEF) $(LIBS) -c $< $(VERBOSE)
.f.o:
$(FORTRAN) $(FFLAGS) -c $<

50
superlu-5x-fix-testsuite.patch
Unescape View File

@ -1,50 +0,0 @@
--- SuperLU_5.1.1/TESTING/Makefile.orig 2016-03-26 08:56:10.347188385 -0400
+++ SuperLU_5.1.1/TESTING/Makefile 2016-03-26 08:58:39.763126530 -0400
@@ -52,9 +52,9 @@
single: ./stest stest.out
-./stest: $(SLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./stest: $(SLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(SLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
stest.out: stest stest.csh
@echo Testing SINGLE PRECISION linear equation routines
@@ -62,9 +62,9 @@
double: ./dtest dtest.out
-./dtest: $(DLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./dtest: $(DLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(DLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
dtest.out: dtest dtest.csh
@echo Testing DOUBLE PRECISION linear equation routines
@@ -72,9 +72,9 @@
complex: ./ctest ctest.out
-./ctest: $(CLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./ctest: $(CLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(CLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
ctest.out: ctest ctest.csh
@echo Testing SINGLE COMPLEX linear equation routines
@@ -82,9 +82,9 @@
complex16: ./ztest ztest.out
-./ztest: $(ZLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./ztest: $(ZLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(ZLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
ztest.out: ztest ztest.csh
@echo Testing DOUBLE COMPLEX linear equation routines

9
superlu-cmake-includedir.patch
Unescape View File

@ -0,0 +1,9 @@
--- SuperLU_5.2.1/SRC/CMakeLists.txt 2018-04-13 17:01:44.007761121 +0200
+++ CMakeLists.txt 2018-04-13 17:01:30.573718261 +0200
@@ -242,5 +242,5 @@
install(FILES ${headers}
# DESTINATION ${CMAKE_INSTALL_PREFIX}/include
- DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/SuperLU
)

14
superlu-cmake-setup.patch
Unescape View File

@ -0,0 +1,14 @@
--- /tmp/SuperLU_5.2.0/SRC/CMakeLists.txt 2016-04-09 03:53:17.000000000 +0200
+++ SuperLU_5.2.0/SRC/CMakeLists.txt 2018-04-13 11:42:28.481583088 +0200
@@ -233,9 +233,9 @@
VERSION ${PROJECT_VERSION} SOVERSION ${VERSION_MAJOR}
)
install(TARGETS superlu
- DESTINATION ${CMAKE_INSTALL_PREFIX}/lib
+ DESTINATION ${CMAKE_INSTALL_LIBDIR}
)
install(FILES ${headers}
- DESTINATION ${CMAKE_INSTALL_PREFIX}/include
+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
)

2659
superlu-removemc64.patch
View File

File diff suppressed because it is too large Load Diff
Write Preview
Loading…
Cancel
Save