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- Build parallel hdf5 packages for mpich2 and openmpi

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- Rework multiarch support and drop multiarch patch
epel9
Orion Poplawski 14 years ago
parent 56cc5c14a0
commit f6e9a837cd
2 changed files with 172 additions and 53 deletions
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18
hdf5-1.8.0-multiarch.patch
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@ -1,18 +0,0 @@
--- hdf5-1.8.0/src/H5public.h.multiarch 2008-02-12 19:38:32.000000000 -0700
+++ hdf5-1.8.0/src/H5public.h 2008-02-29 14:50:23.000000000 -0700
@@ -28,7 +28,14 @@
* it via H5public.h. The #ifndef _H5public_H guard above would
* prevent repeated include.
*/
-#include "H5pubconf.h" /*from configure */
+#include <bits/wordsize.h>
+#if __WORDSIZE == 32
+#include "H5pubconf-32.h"
+#elif __WORDSIZE == 64
+#include "H5pubconf-64.h"
+#else
+#error "Unknown word size"
+#endif
/* API Version macro wrapper definitions */
#include "H5version.h"

207
hdf5.spec
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@ -1,7 +1,7 @@
%define snaprel %{nil}
Name: hdf5
Version: 1.8.5.patch1
Release: 1%{?dist}
Release: 2%{?dist}
Summary: A general purpose library and file format for storing scientific data
License: BSD
Group: System Environment/Libraries
@ -10,18 +10,17 @@ URL: http://www.hdfgroup.org/HDF5/
Source0: http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.5-patch1.tar.bz2
Source1: h5comp
Patch1: hdf5-1.8.5-longdouble.patch
Patch3: hdf5-1.8.0-multiarch.patch
Patch4: hdf5-1.8.5-tstlite.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildRequires: krb5-devel, openssl-devel, zlib-devel, gcc-gfortran, time
%description
HDF5 is a general purpose library and file format for storing scientific data.
HDF5 can store two primary objects: datasets and groups. A dataset is
essentially a multidimensional array of data elements, and a group is a
structure for organizing objects in an HDF5 file. Using these two basic
objects, one can create and store almost any kind of scientific data
structure, such as images, arrays of vectors, and structured and unstructured
HDF5 can store two primary objects: datasets and groups. A dataset is
essentially a multidimensional array of data elements, and a group is a
structure for organizing objects in an HDF5 file. Using these two basic
objects, one can create and store almost any kind of scientific data
structure, such as images, arrays of vectors, and structured and unstructured
grids. You can also mix and match them in HDF5 files according to your needs.
@ -43,51 +42,124 @@ Requires: %{name}-devel = %{version}-%{release}
HDF5 static libraries.
%package mpich2
Summary: HDF5 mpich2 libraries
Group: Development/Libraries
Requires: mpich2
BuildRequires: mpich2-devel
%description mpich2
HDF5 parallel mpich2 libraries
%package mpich2-devel
Summary: HDF5 mpich2 development files
Group: Development/Libraries
Requires: mpich2-devel, %{name}-mpich2 = %{version}-%{release}
%description mpich2-devel
HDF5 parallel mpich2 development files
%package openmpi
Summary: HDF5 openmpi libraries
Group: Development/Libraries
Requires: openmpi
BuildRequires: openmpi-devel
%description openmpi
HDF5 parallel openmpi libraries
%package openmpi-devel
Summary: HDF5 openmpi development files
Group: Development/Libraries
Requires: openmpi-devel, %{name}-openmpi = %{version}-%{release}
%description openmpi-devel
HDF5 parallel openmpi development files
%prep
#setup -q -n %{name}-%{version}%{?snaprel}
%setup -q -n %{name}-1.8.5-patch1
%ifarch ppc64
%patch1 -p1 -b .longdouble
%endif
%patch3 -p1 -b .multiarch
%patch4 -p1 -b .tstlite
find -name '*.[ch]' -o -name '*.f90' -exec chmod -x {} +
%build
#Do out of tree builds
%global _configure ../configure
#Common configure options
%global configure_opts \\\
--disable-dependency-tracking \\\
--enable-fortran \\\
--enable-hl \\\
--enable-shared \\\
%{nil}
# --enable-cxx and --enable-parallel flags are incompatible
# --with-mpe=DIR Use MPE instrumentation [default=no]
# --enable-cxx/fortran/parallel and --enable-threadsafe flags are incompatible
#Serial build
export CC=gcc
export CXX=g++
export F9X=gfortran
export CFLAGS="${RPM_OPT_FLAGS/O2/O0}"
mkdir build
pushd build
%configure \
--disable-dependency-tracking \
--enable-cxx \
--enable-fortran \
--enable-hl
# --enable-cxx/fortran and --enable-parallel flags are incompatible
# --with-mpe=DIR Use MPE instrumentation [default=no]
# --enable-cxx/fortran/parallel and --enable-threadsafe flags are incompatible
#Multiarch header
%ifarch x86_64 ppc64 ia64 s390x sparc64 alpha
cp src/H5pubconf.h \
src/H5pubconf-64.h
%else
cp src/H5pubconf.h \
src/H5pubconf-32.h
%endif
%{configure_opts} \
--enable-cxx
make
popd
#MPI builds
export CC=mpicc
export CXX=mpicxx
export F9X=mpif90
for mpi in mpich2 openmpi
do
mkdir $mpi
pushd $mpi
module load $mpi-%{_arch}
%configure \
%{configure_opts} \
--enable-parallel \
--disable-static \
--libdir=%{_libdir}/$mpi/lib \
--bindir=%{_libdir}/$mpi/bin \
--sbindir=%{_libdir}/$mpi/sbin \
--includedir=%{_includedir}/$mpi-%{_arch} \
--datarootdir=%{_libdir}/$mpi/share \
--mandir=%{_libdir}/$mpi/share/man \
make
module purge
popd
done
%install
rm -rf $RPM_BUILD_ROOT
make install DESTDIR=${RPM_BUILD_ROOT}
rm -rf $RPM_BUILD_ROOT/%{_libdir}/*.la
make -C build install DESTDIR=${RPM_BUILD_ROOT}
rm $RPM_BUILD_ROOT/%{_libdir}/*.la
for mpi in mpich2 openmpi
do
module load $mpi-%{_arch}
make -C $mpi install DESTDIR=${RPM_BUILD_ROOT}
rm $RPM_BUILD_ROOT/%{_libdir}/$mpi/lib/*.la
module purge
done
#Fortran modules
mkdir -p ${RPM_BUILD_ROOT}%{_fmoddir}
mv ${RPM_BUILD_ROOT}%{_includedir}/*.mod ${RPM_BUILD_ROOT}%{_fmoddir}
#Fixup headers and scripts for multiarch
%ifarch x86_64 ppc64 ia64 s390x sparc64 alpha
sed -i -e s/H5pubconf.h/H5pubconf-64.h/ ${RPM_BUILD_ROOT}%{_includedir}/H5public.h
mv ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf.h \
${RPM_BUILD_ROOT}%{_includedir}/H5pubconf-64.h
for x in h5c++ h5cc h5fc
@ -97,6 +169,7 @@ do
install -m 0755 %SOURCE1 ${RPM_BUILD_ROOT}%{_bindir}/${x}
done
%else
sed -i -e s/H5pubconf.h/H5pubconf-32.h/ ${RPM_BUILD_ROOT}%{_includedir}/H5public.h
mv ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf.h \
${RPM_BUILD_ROOT}%{_includedir}/H5pubconf-32.h
for x in h5c++ h5cc h5fc
@ -109,7 +182,14 @@ done
%check
make check
make -C build check
#These really don't work on builders
#for mpi in mpich2 openmpi
#do
# module load $mpi-%{_arch}
# make -C $mpi check
# module purge
#done
%clean
@ -144,12 +224,9 @@ rm -rf $RPM_BUILD_ROOT
%files devel
%defattr(-,root,root,-)
%{_bindir}/h5c++
%{_bindir}/h5c++-*
%{_bindir}/h5cc
%{_bindir}/h5cc-*
%{_bindir}/h5fc
%{_bindir}/h5fc-*
%{_bindir}/h5c++*
%{_bindir}/h5cc*
%{_bindir}/h5fc*
%{_bindir}/h5redeploy
%{_includedir}/*.h
%{_libdir}/*.so
@ -161,8 +238,68 @@ rm -rf $RPM_BUILD_ROOT
%defattr(-,root,root,-)
%{_libdir}/*.a
%files mpich2
%defattr(-,root,root,-)
%{_libdir}/mpich2/bin/gif2h5
%{_libdir}/mpich2/bin/h52gif
%{_libdir}/mpich2/bin/h5copy
%{_libdir}/mpich2/bin/h5debug
%{_libdir}/mpich2/bin/h5diff
%{_libdir}/mpich2/bin/h5dump
%{_libdir}/mpich2/bin/h5import
%{_libdir}/mpich2/bin/h5jam
%{_libdir}/mpich2/bin/h5ls
%{_libdir}/mpich2/bin/h5mkgrp
%{_libdir}/mpich2/bin/h5repack
%{_libdir}/mpich2/bin/h5perf
%{_libdir}/mpich2/bin/h5repart
%{_libdir}/mpich2/bin/h5stat
%{_libdir}/mpich2/bin/h5unjam
%{_libdir}/mpich2/bin/ph5diff
%{_libdir}/mpich2/lib/*.so.*
%files openmpi
%defattr(-,root,root,-)
%{_libdir}/openmpi/bin/gif2h5
%{_libdir}/openmpi/bin/h52gif
%{_libdir}/openmpi/bin/h5copy
%{_libdir}/openmpi/bin/h5debug
%{_libdir}/openmpi/bin/h5diff
%{_libdir}/openmpi/bin/h5dump
%{_libdir}/openmpi/bin/h5import
%{_libdir}/openmpi/bin/h5jam
%{_libdir}/openmpi/bin/h5ls
%{_libdir}/openmpi/bin/h5mkgrp
%{_libdir}/openmpi/bin/h5perf
%{_libdir}/openmpi/bin/h5repack
%{_libdir}/openmpi/bin/h5repart
%{_libdir}/openmpi/bin/h5stat
%{_libdir}/openmpi/bin/h5unjam
%{_libdir}/openmpi/bin/ph5diff
%{_libdir}/openmpi/lib/*.so.*
%files mpich2-devel
%defattr(-,root,root,-)
%{_includedir}/mpich2-%{_arch}
%{_libdir}/mpich2/bin/h5pcc
%{_libdir}/mpich2/bin/h5pfc
%{_libdir}/mpich2/lib/lib*.so
%{_libdir}/mpich2/lib/lib*.settings
%files openmpi-devel
%defattr(-,root,root,-)
%{_includedir}/openmpi-%{_arch}
%{_libdir}/openmpi/bin/h5pcc
%{_libdir}/openmpi/bin/h5pfc
%{_libdir}/openmpi/lib/lib*.so
%{_libdir}/openmpi/lib/lib*.settings
%changelog
* Tue Oct 26 2010 Orion Poplawski <orion@cora.nwra.com> 1.8.5.patch1-2
- Build parallel hdf5 packages for mpich2 and openmpi
- Rework multiarch support and drop multiarch patch
* Tue Sep 7 2010 Orion Poplawski <orion@cora.nwra.com> 1.8.5.patch1-1
- Update to 1.8.5-patch1
@ -222,7 +359,7 @@ rm -rf $RPM_BUILD_ROOT
* Fri Sep 26 2008 Orion Poplawski <orion@cora.nwra.com> 1.8.1-2
- Add patch to filter -little as option used on sh arch (#464052)
* Thu Jun 5 2008 Orion Poplawski <orion@cora.nwra.com> 1.8.1-1
- Update to 1.8.1
@ -231,12 +368,12 @@ rm -rf $RPM_BUILD_ROOT
* Tue May 13 2008 Orion Poplawski <orion@cora.nwra.com> 1.8.0.snap5-2
- Use new %%{_fmoddir} macro
- Re-enable ppc64, disable failing tests. Failing tests are for
- Re-enable ppc64, disable failing tests. Failing tests are for
experimental long double support.
* Mon May 5 2008 Orion Poplawski <orion@cora.nwra.com> 1.8.0.snap5-1
- Update to 1.8.0-snap5
- Remove --enable-threadsafe, incompatible with --enable-cxx and
- Remove --enable-threadsafe, incompatible with --enable-cxx and
--enable-fortran
- ExcludeArch ppc64 until we can get it to build (bug #445423)

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