diff --git a/.gitignore b/.gitignore index c4de05f..ccbbe10 100644 --- a/.gitignore +++ b/.gitignore @@ -9,3 +9,4 @@ hdf5-1.8.5.tar.bz2 /hdf5_1.8.10-patch1-1.debian.tar.gz /hdf5-1.8.12.tar.bz2 /hdf5_1.8.12-1.debian.tar.gz +/hdf5_1.8.12-4.debian.tar.gz diff --git a/hdf5-aarch64.patch b/hdf5-aarch64.patch new file mode 100644 index 0000000..bde9c63 --- /dev/null +++ b/hdf5-aarch64.patch @@ -0,0 +1,1527 @@ +diff -up hdf5-1.8.12/bin/config.guess.aarch64 hdf5-1.8.12/bin/config.guess +--- hdf5-1.8.12/bin/config.guess.aarch64 2013-11-21 08:14:01.000000000 -0700 ++++ hdf5-1.8.12/bin/config.guess 2014-01-08 19:55:58.086311126 -0700 +@@ -1,10 +1,10 @@ + #! /bin/sh + # Attempt to guess a canonical system name. + # Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, +-# 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 +-# Free Software Foundation, Inc. ++# 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, ++# 2011, 2012 Free Software Foundation, Inc. + +-timestamp='2008-01-23' ++timestamp='2012-09-25' + + # This file is free software; you can redistribute it and/or modify it + # under the terms of the GNU General Public License as published by +@@ -17,9 +17,7 @@ timestamp='2008-01-23' + # General Public License for more details. + # + # You should have received a copy of the GNU General Public License +-# along with this program; if not, write to the Free Software +-# Foundation, Inc., 51 Franklin Street - Fifth Floor, Boston, MA +-# 02110-1301, USA. ++# along with this program; if not, see . + # + # As a special exception to the GNU General Public License, if you + # distribute this file as part of a program that contains a +@@ -27,16 +25,16 @@ timestamp='2008-01-23' + # the same distribution terms that you use for the rest of that program. + + +-# Originally written by Per Bothner . +-# Please send patches to . Submit a context +-# diff and a properly formatted ChangeLog entry. ++# Originally written by Per Bothner. Please send patches (context ++# diff format) to and include a ChangeLog ++# entry. + # + # This script attempts to guess a canonical system name similar to + # config.sub. If it succeeds, it prints the system name on stdout, and + # exits with 0. Otherwise, it exits with 1. + # +-# The plan is that this can be called by configure scripts if you +-# don't specify an explicit build system type. ++# You can get the latest version of this script from: ++# http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD + + me=`echo "$0" | sed -e 's,.*/,,'` + +@@ -56,8 +54,9 @@ version="\ + GNU config.guess ($timestamp) + + Originally written by Per Bothner. +-Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, +-2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. ++Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, ++2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012 ++Free Software Foundation, Inc. + + This is free software; see the source for copying conditions. There is NO + warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE." +@@ -144,7 +143,7 @@ UNAME_VERSION=`(uname -v) 2>/dev/null` | + case "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" in + *:NetBSD:*:*) + # NetBSD (nbsd) targets should (where applicable) match one or +- # more of the tupples: *-*-netbsdelf*, *-*-netbsdaout*, ++ # more of the tuples: *-*-netbsdelf*, *-*-netbsdaout*, + # *-*-netbsdecoff* and *-*-netbsd*. For targets that recently + # switched to ELF, *-*-netbsd* would select the old + # object file format. This provides both forward +@@ -170,7 +169,7 @@ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:$ + arm*|i386|m68k|ns32k|sh3*|sparc|vax) + eval $set_cc_for_build + if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \ +- | grep __ELF__ >/dev/null ++ | grep -q __ELF__ + then + # Once all utilities can be ECOFF (netbsdecoff) or a.out (netbsdaout). + # Return netbsd for either. FIX? +@@ -180,7 +179,7 @@ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:$ + fi + ;; + *) +- os=netbsd ++ os=netbsd + ;; + esac + # The OS release +@@ -201,6 +200,10 @@ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:$ + # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used. + echo "${machine}-${os}${release}" + exit ;; ++ *:Bitrig:*:*) ++ UNAME_MACHINE_ARCH=`arch | sed 's/Bitrig.//'` ++ echo ${UNAME_MACHINE_ARCH}-unknown-bitrig${UNAME_RELEASE} ++ exit ;; + *:OpenBSD:*:*) + UNAME_MACHINE_ARCH=`arch | sed 's/OpenBSD.//'` + echo ${UNAME_MACHINE_ARCH}-unknown-openbsd${UNAME_RELEASE} +@@ -223,7 +226,7 @@ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:$ + UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'` + ;; + *5.*) +- UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'` ++ UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'` + ;; + esac + # According to Compaq, /usr/sbin/psrinfo has been available on +@@ -269,7 +272,10 @@ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:$ + # A Xn.n version is an unreleased experimental baselevel. + # 1.2 uses "1.2" for uname -r. + echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[PVTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'` +- exit ;; ++ # Reset EXIT trap before exiting to avoid spurious non-zero exit code. ++ exitcode=$? ++ trap '' 0 ++ exit $exitcode ;; + Alpha\ *:Windows_NT*:*) + # How do we know it's Interix rather than the generic POSIX subsystem? + # Should we change UNAME_MACHINE based on the output of uname instead +@@ -295,12 +301,12 @@ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:$ + echo s390-ibm-zvmoe + exit ;; + *:OS400:*:*) +- echo powerpc-ibm-os400 ++ echo powerpc-ibm-os400 + exit ;; + arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*) + echo arm-acorn-riscix${UNAME_RELEASE} + exit ;; +- arm:riscos:*:*|arm:RISCOS:*:*) ++ arm*:riscos:*:*|arm*:RISCOS:*:*) + echo arm-unknown-riscos + exit ;; + SR2?01:HI-UX/MPP:*:* | SR8000:HI-UX/MPP:*:*) +@@ -324,14 +330,33 @@ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:$ + case `/usr/bin/uname -p` in + sparc) echo sparc-icl-nx7; exit ;; + esac ;; ++ s390x:SunOS:*:*) ++ echo ${UNAME_MACHINE}-ibm-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` ++ exit ;; + sun4H:SunOS:5.*:*) + echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` + exit ;; + sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*) + echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` + exit ;; ++ i86pc:AuroraUX:5.*:* | i86xen:AuroraUX:5.*:*) ++ echo i386-pc-auroraux${UNAME_RELEASE} ++ exit ;; + i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*) +- echo i386-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` ++ eval $set_cc_for_build ++ SUN_ARCH="i386" ++ # If there is a compiler, see if it is configured for 64-bit objects. ++ # Note that the Sun cc does not turn __LP64__ into 1 like gcc does. ++ # This test works for both compilers. ++ if [ "$CC_FOR_BUILD" != 'no_compiler_found' ]; then ++ if (echo '#ifdef __amd64'; echo IS_64BIT_ARCH; echo '#endif') | \ ++ (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | \ ++ grep IS_64BIT_ARCH >/dev/null ++ then ++ SUN_ARCH="x86_64" ++ fi ++ fi ++ echo ${SUN_ARCH}-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'` + exit ;; + sun4*:SunOS:6*:*) + # According to config.sub, this is the proper way to canonicalize +@@ -375,23 +400,23 @@ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:$ + # MiNT. But MiNT is downward compatible to TOS, so this should + # be no problem. + atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*) +- echo m68k-atari-mint${UNAME_RELEASE} ++ echo m68k-atari-mint${UNAME_RELEASE} + exit ;; + atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*) + echo m68k-atari-mint${UNAME_RELEASE} +- exit ;; ++ exit ;; + *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*) +- echo m68k-atari-mint${UNAME_RELEASE} ++ echo m68k-atari-mint${UNAME_RELEASE} + exit ;; + milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*) +- echo m68k-milan-mint${UNAME_RELEASE} +- exit ;; ++ echo m68k-milan-mint${UNAME_RELEASE} ++ exit ;; + hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*) +- echo m68k-hades-mint${UNAME_RELEASE} +- exit ;; ++ echo m68k-hades-mint${UNAME_RELEASE} ++ exit ;; + *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*) +- echo m68k-unknown-mint${UNAME_RELEASE} +- exit ;; ++ echo m68k-unknown-mint${UNAME_RELEASE} ++ exit ;; + m68k:machten:*:*) + echo m68k-apple-machten${UNAME_RELEASE} + exit ;; +@@ -461,8 +486,8 @@ EOF + echo m88k-motorola-sysv3 + exit ;; + AViiON:dgux:*:*) +- # DG/UX returns AViiON for all architectures +- UNAME_PROCESSOR=`/usr/bin/uname -p` ++ # DG/UX returns AViiON for all architectures ++ UNAME_PROCESSOR=`/usr/bin/uname -p` + if [ $UNAME_PROCESSOR = mc88100 ] || [ $UNAME_PROCESSOR = mc88110 ] + then + if [ ${TARGET_BINARY_INTERFACE}x = m88kdguxelfx ] || \ +@@ -475,7 +500,7 @@ EOF + else + echo i586-dg-dgux${UNAME_RELEASE} + fi +- exit ;; ++ exit ;; + M88*:DolphinOS:*:*) # DolphinOS (SVR3) + echo m88k-dolphin-sysv3 + exit ;; +@@ -532,7 +557,7 @@ EOF + echo rs6000-ibm-aix3.2 + fi + exit ;; +- *:AIX:*:[456]) ++ *:AIX:*:[4567]) + IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'` + if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then + IBM_ARCH=rs6000 +@@ -575,52 +600,52 @@ EOF + 9000/[678][0-9][0-9]) + if [ -x /usr/bin/getconf ]; then + sc_cpu_version=`/usr/bin/getconf SC_CPU_VERSION 2>/dev/null` +- sc_kernel_bits=`/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null` +- case "${sc_cpu_version}" in +- 523) HP_ARCH="hppa1.0" ;; # CPU_PA_RISC1_0 +- 528) HP_ARCH="hppa1.1" ;; # CPU_PA_RISC1_1 +- 532) # CPU_PA_RISC2_0 +- case "${sc_kernel_bits}" in +- 32) HP_ARCH="hppa2.0n" ;; +- 64) HP_ARCH="hppa2.0w" ;; ++ sc_kernel_bits=`/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null` ++ case "${sc_cpu_version}" in ++ 523) HP_ARCH="hppa1.0" ;; # CPU_PA_RISC1_0 ++ 528) HP_ARCH="hppa1.1" ;; # CPU_PA_RISC1_1 ++ 532) # CPU_PA_RISC2_0 ++ case "${sc_kernel_bits}" in ++ 32) HP_ARCH="hppa2.0n" ;; ++ 64) HP_ARCH="hppa2.0w" ;; + '') HP_ARCH="hppa2.0" ;; # HP-UX 10.20 +- esac ;; +- esac ++ esac ;; ++ esac + fi + if [ "${HP_ARCH}" = "" ]; then + eval $set_cc_for_build +- sed 's/^ //' << EOF >$dummy.c ++ sed 's/^ //' << EOF >$dummy.c ++ ++ #define _HPUX_SOURCE ++ #include ++ #include ++ ++ int main () ++ { ++ #if defined(_SC_KERNEL_BITS) ++ long bits = sysconf(_SC_KERNEL_BITS); ++ #endif ++ long cpu = sysconf (_SC_CPU_VERSION); + +- #define _HPUX_SOURCE +- #include +- #include +- +- int main () +- { +- #if defined(_SC_KERNEL_BITS) +- long bits = sysconf(_SC_KERNEL_BITS); +- #endif +- long cpu = sysconf (_SC_CPU_VERSION); +- +- switch (cpu) +- { +- case CPU_PA_RISC1_0: puts ("hppa1.0"); break; +- case CPU_PA_RISC1_1: puts ("hppa1.1"); break; +- case CPU_PA_RISC2_0: +- #if defined(_SC_KERNEL_BITS) +- switch (bits) +- { +- case 64: puts ("hppa2.0w"); break; +- case 32: puts ("hppa2.0n"); break; +- default: puts ("hppa2.0"); break; +- } break; +- #else /* !defined(_SC_KERNEL_BITS) */ +- puts ("hppa2.0"); break; +- #endif +- default: puts ("hppa1.0"); break; +- } +- exit (0); +- } ++ switch (cpu) ++ { ++ case CPU_PA_RISC1_0: puts ("hppa1.0"); break; ++ case CPU_PA_RISC1_1: puts ("hppa1.1"); break; ++ case CPU_PA_RISC2_0: ++ #if defined(_SC_KERNEL_BITS) ++ switch (bits) ++ { ++ case 64: puts ("hppa2.0w"); break; ++ case 32: puts ("hppa2.0n"); break; ++ default: puts ("hppa2.0"); break; ++ } break; ++ #else /* !defined(_SC_KERNEL_BITS) */ ++ puts ("hppa2.0"); break; ++ #endif ++ default: puts ("hppa1.0"); break; ++ } ++ exit (0); ++ } + EOF + (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy` + test -z "$HP_ARCH" && HP_ARCH=hppa +@@ -640,7 +665,7 @@ EOF + # => hppa64-hp-hpux11.23 + + if echo __LP64__ | (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | +- grep __LP64__ >/dev/null ++ grep -q __LP64__ + then + HP_ARCH="hppa2.0w" + else +@@ -711,22 +736,22 @@ EOF + exit ;; + C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*) + echo c1-convex-bsd +- exit ;; ++ exit ;; + C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*) + if getsysinfo -f scalar_acc + then echo c32-convex-bsd + else echo c2-convex-bsd + fi +- exit ;; ++ exit ;; + C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*) + echo c34-convex-bsd +- exit ;; ++ exit ;; + C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*) + echo c38-convex-bsd +- exit ;; ++ exit ;; + C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*) + echo c4-convex-bsd +- exit ;; ++ exit ;; + CRAY*Y-MP:*:*:*) + echo ymp-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/' + exit ;; +@@ -750,14 +775,14 @@ EOF + exit ;; + F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*) + FUJITSU_PROC=`uname -m | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'` +- FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` +- FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'` +- echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" +- exit ;; ++ FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` ++ FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'` ++ echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" ++ exit ;; + 5000:UNIX_System_V:4.*:*) +- FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` +- FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'` +- echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" ++ FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'` ++ FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'` ++ echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}" + exit ;; + i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*) + echo ${UNAME_MACHINE}-pc-bsdi${UNAME_RELEASE} +@@ -806,6 +831,9 @@ EOF + [345]86:Windows_95:* | [345]86:Windows_98:* | [345]86:Windows_NT:*) + echo i${UNAME_MACHINE}-pc-mks + exit ;; ++ 8664:Windows_NT:*) ++ echo x86_64-pc-mks ++ exit ;; + i*:Windows_NT*:* | Pentium*:Windows_NT*:*) + # How do we know it's Interix rather than the generic POSIX subsystem? + # It also conflicts with pre-2.0 versions of AT&T UWIN. Should we +@@ -835,6 +863,27 @@ EOF + i*86:Minix:*:*) + echo ${UNAME_MACHINE}-pc-minix + exit ;; ++ aarch64:Linux:*:*) ++ echo ${UNAME_MACHINE}-unknown-linux-gnu ++ exit ;; ++ aarch64_be:Linux:*:*) ++ UNAME_MACHINE=aarch64_be ++ echo ${UNAME_MACHINE}-unknown-linux-gnu ++ exit ;; ++ alpha:Linux:*:*) ++ case `sed -n '/^cpu model/s/^.*: \(.*\)/\1/p' < /proc/cpuinfo` in ++ EV5) UNAME_MACHINE=alphaev5 ;; ++ EV56) UNAME_MACHINE=alphaev56 ;; ++ PCA56) UNAME_MACHINE=alphapca56 ;; ++ PCA57) UNAME_MACHINE=alphapca56 ;; ++ EV6) UNAME_MACHINE=alphaev6 ;; ++ EV67) UNAME_MACHINE=alphaev67 ;; ++ EV68*) UNAME_MACHINE=alphaev68 ;; ++ esac ++ objdump --private-headers /bin/sh | grep -q ld.so.1 ++ if test "$?" = 0 ; then LIBC="libc1" ; else LIBC="" ; fi ++ echo ${UNAME_MACHINE}-unknown-linux-gnu${LIBC} ++ exit ;; + arm*:Linux:*:*) + eval $set_cc_for_build + if echo __ARM_EABI__ | $CC_FOR_BUILD -E - 2>/dev/null \ +@@ -842,20 +891,40 @@ EOF + then + echo ${UNAME_MACHINE}-unknown-linux-gnu + else +- echo ${UNAME_MACHINE}-unknown-linux-gnueabi ++ if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \ ++ | grep -q __ARM_PCS_VFP ++ then ++ echo ${UNAME_MACHINE}-unknown-linux-gnueabi ++ else ++ echo ${UNAME_MACHINE}-unknown-linux-gnueabihf ++ fi + fi + exit ;; + avr32*:Linux:*:*) + echo ${UNAME_MACHINE}-unknown-linux-gnu + exit ;; + cris:Linux:*:*) +- echo cris-axis-linux-gnu ++ echo ${UNAME_MACHINE}-axis-linux-gnu + exit ;; + crisv32:Linux:*:*) +- echo crisv32-axis-linux-gnu ++ echo ${UNAME_MACHINE}-axis-linux-gnu + exit ;; + frv:Linux:*:*) +- echo frv-unknown-linux-gnu ++ echo ${UNAME_MACHINE}-unknown-linux-gnu ++ exit ;; ++ hexagon:Linux:*:*) ++ echo ${UNAME_MACHINE}-unknown-linux-gnu ++ exit ;; ++ i*86:Linux:*:*) ++ LIBC=gnu ++ eval $set_cc_for_build ++ sed 's/^ //' << EOF >$dummy.c ++ #ifdef __dietlibc__ ++ LIBC=dietlibc ++ #endif ++EOF ++ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^LIBC'` ++ echo "${UNAME_MACHINE}-pc-linux-${LIBC}" + exit ;; + ia64:Linux:*:*) + echo ${UNAME_MACHINE}-unknown-linux-gnu +@@ -866,74 +935,33 @@ EOF + m68*:Linux:*:*) + echo ${UNAME_MACHINE}-unknown-linux-gnu + exit ;; +- mips:Linux:*:*) ++ mips:Linux:*:* | mips64:Linux:*:*) + eval $set_cc_for_build + sed 's/^ //' << EOF >$dummy.c + #undef CPU +- #undef mips +- #undef mipsel ++ #undef ${UNAME_MACHINE} ++ #undef ${UNAME_MACHINE}el + #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL) +- CPU=mipsel ++ CPU=${UNAME_MACHINE}el + #else + #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB) +- CPU=mips ++ CPU=${UNAME_MACHINE} + #else + CPU= + #endif + #endif + EOF +- eval "`$CC_FOR_BUILD -E $dummy.c 2>/dev/null | sed -n ' +- /^CPU/{ +- s: ::g +- p +- }'`" +- test x"${CPU}" != x && { echo "${CPU}-unknown-linux-gnu"; exit; } +- ;; +- mips64:Linux:*:*) +- eval $set_cc_for_build +- sed 's/^ //' << EOF >$dummy.c +- #undef CPU +- #undef mips64 +- #undef mips64el +- #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL) +- CPU=mips64el +- #else +- #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB) +- CPU=mips64 +- #else +- CPU= +- #endif +- #endif +-EOF +- eval "`$CC_FOR_BUILD -E $dummy.c 2>/dev/null | sed -n ' +- /^CPU/{ +- s: ::g +- p +- }'`" ++ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^CPU'` + test x"${CPU}" != x && { echo "${CPU}-unknown-linux-gnu"; exit; } + ;; + or32:Linux:*:*) +- echo or32-unknown-linux-gnu +- exit ;; +- ppc:Linux:*:*) +- echo powerpc-unknown-linux-gnu ++ echo ${UNAME_MACHINE}-unknown-linux-gnu + exit ;; +- ppc64:Linux:*:*) +- echo powerpc64-unknown-linux-gnu ++ padre:Linux:*:*) ++ echo sparc-unknown-linux-gnu + exit ;; +- alpha:Linux:*:*) +- case `sed -n '/^cpu model/s/^.*: \(.*\)/\1/p' < /proc/cpuinfo` in +- EV5) UNAME_MACHINE=alphaev5 ;; +- EV56) UNAME_MACHINE=alphaev56 ;; +- PCA56) UNAME_MACHINE=alphapca56 ;; +- PCA57) UNAME_MACHINE=alphapca56 ;; +- EV6) UNAME_MACHINE=alphaev6 ;; +- EV67) UNAME_MACHINE=alphaev67 ;; +- EV68*) UNAME_MACHINE=alphaev68 ;; +- esac +- objdump --private-headers /bin/sh | grep ld.so.1 >/dev/null +- if test "$?" = 0 ; then LIBC="libc1" ; else LIBC="" ; fi +- echo ${UNAME_MACHINE}-unknown-linux-gnu${LIBC} ++ parisc64:Linux:*:* | hppa64:Linux:*:*) ++ echo hppa64-unknown-linux-gnu + exit ;; + parisc:Linux:*:* | hppa:Linux:*:*) + # Look for CPU level +@@ -943,14 +971,17 @@ EOF + *) echo hppa-unknown-linux-gnu ;; + esac + exit ;; +- parisc64:Linux:*:* | hppa64:Linux:*:*) +- echo hppa64-unknown-linux-gnu ++ ppc64:Linux:*:*) ++ echo powerpc64-unknown-linux-gnu ++ exit ;; ++ ppc:Linux:*:*) ++ echo powerpc-unknown-linux-gnu + exit ;; + s390:Linux:*:* | s390x:Linux:*:*) + echo ${UNAME_MACHINE}-ibm-linux + exit ;; + sh64*:Linux:*:*) +- echo ${UNAME_MACHINE}-unknown-linux-gnu ++ echo ${UNAME_MACHINE}-unknown-linux-gnu + exit ;; + sh*:Linux:*:*) + echo ${UNAME_MACHINE}-unknown-linux-gnu +@@ -958,78 +989,18 @@ EOF + sparc:Linux:*:* | sparc64:Linux:*:*) + echo ${UNAME_MACHINE}-unknown-linux-gnu + exit ;; ++ tile*:Linux:*:*) ++ echo ${UNAME_MACHINE}-unknown-linux-gnu ++ exit ;; + vax:Linux:*:*) + echo ${UNAME_MACHINE}-dec-linux-gnu + exit ;; + x86_64:Linux:*:*) +- echo x86_64-unknown-linux-gnu ++ echo ${UNAME_MACHINE}-unknown-linux-gnu + exit ;; + xtensa*:Linux:*:*) +- echo ${UNAME_MACHINE}-unknown-linux-gnu ++ echo ${UNAME_MACHINE}-unknown-linux-gnu + exit ;; +- i*86:Linux:*:*) +- # The BFD linker knows what the default object file format is, so +- # first see if it will tell us. cd to the root directory to prevent +- # problems with other programs or directories called `ld' in the path. +- # Set LC_ALL=C to ensure ld outputs messages in English. +- ld_supported_targets=`cd /; LC_ALL=C ld --help 2>&1 \ +- | sed -ne '/supported targets:/!d +- s/[ ][ ]*/ /g +- s/.*supported targets: *// +- s/ .*// +- p'` +- case "$ld_supported_targets" in +- elf32-i386) +- TENTATIVE="${UNAME_MACHINE}-pc-linux-gnu" +- ;; +- a.out-i386-linux) +- echo "${UNAME_MACHINE}-pc-linux-gnuaout" +- exit ;; +- coff-i386) +- echo "${UNAME_MACHINE}-pc-linux-gnucoff" +- exit ;; +- "") +- # Either a pre-BFD a.out linker (linux-gnuoldld) or +- # one that does not give us useful --help. +- echo "${UNAME_MACHINE}-pc-linux-gnuoldld" +- exit ;; +- esac +- # Determine whether the default compiler is a.out or elf +- eval $set_cc_for_build +- sed 's/^ //' << EOF >$dummy.c +- #include +- #ifdef __ELF__ +- # ifdef __GLIBC__ +- # if __GLIBC__ >= 2 +- LIBC=gnu +- # else +- LIBC=gnulibc1 +- # endif +- # else +- LIBC=gnulibc1 +- # endif +- #else +- #if defined(__INTEL_COMPILER) || defined(__PGI) || defined(__SUNPRO_C) || defined(__SUNPRO_CC) +- LIBC=gnu +- #else +- LIBC=gnuaout +- #endif +- #endif +- #ifdef __dietlibc__ +- LIBC=dietlibc +- #endif +-EOF +- eval "`$CC_FOR_BUILD -E $dummy.c 2>/dev/null | sed -n ' +- /^LIBC/{ +- s: ::g +- p +- }'`" +- test x"${LIBC}" != x && { +- echo "${UNAME_MACHINE}-pc-linux-${LIBC}" +- exit +- } +- test x"${TENTATIVE}" != x && { echo "${TENTATIVE}"; exit; } +- ;; + i*86:DYNIX/ptx:4*:*) + # ptx 4.0 does uname -s correctly, with DYNIX/ptx in there. + # earlier versions are messed up and put the nodename in both +@@ -1037,11 +1008,11 @@ EOF + echo i386-sequent-sysv4 + exit ;; + i*86:UNIX_SV:4.2MP:2.*) +- # Unixware is an offshoot of SVR4, but it has its own version +- # number series starting with 2... +- # I am not positive that other SVR4 systems won't match this, ++ # Unixware is an offshoot of SVR4, but it has its own version ++ # number series starting with 2... ++ # I am not positive that other SVR4 systems won't match this, + # I just have to hope. -- rms. +- # Use sysv4.2uw... so that sysv4* matches it. ++ # Use sysv4.2uw... so that sysv4* matches it. + echo ${UNAME_MACHINE}-pc-sysv4.2uw${UNAME_VERSION} + exit ;; + i*86:OS/2:*:*) +@@ -1058,7 +1029,7 @@ EOF + i*86:syllable:*:*) + echo ${UNAME_MACHINE}-pc-syllable + exit ;; +- i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.0*:*) ++ i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.[02]*:*) + echo i386-unknown-lynxos${UNAME_RELEASE} + exit ;; + i*86:*DOS:*:*) +@@ -1073,7 +1044,7 @@ EOF + fi + exit ;; + i*86:*:5:[678]*) +- # UnixWare 7.x, OpenUNIX and OpenServer 6. ++ # UnixWare 7.x, OpenUNIX and OpenServer 6. + case `/bin/uname -X | grep "^Machine"` in + *486*) UNAME_MACHINE=i486 ;; + *Pentium) UNAME_MACHINE=i586 ;; +@@ -1101,10 +1072,13 @@ EOF + exit ;; + pc:*:*:*) + # Left here for compatibility: +- # uname -m prints for DJGPP always 'pc', but it prints nothing about +- # the processor, so we play safe by assuming i386. +- echo i386-pc-msdosdjgpp +- exit ;; ++ # uname -m prints for DJGPP always 'pc', but it prints nothing about ++ # the processor, so we play safe by assuming i586. ++ # Note: whatever this is, it MUST be the same as what config.sub ++ # prints for the "djgpp" host, or else GDB configury will decide that ++ # this is a cross-build. ++ echo i586-pc-msdosdjgpp ++ exit ;; + Intel:Mach:3*:*) + echo i386-pc-mach3 + exit ;; +@@ -1139,8 +1113,18 @@ EOF + /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ + && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ;; + 3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*) +- /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ +- && { echo i486-ncr-sysv4; exit; } ;; ++ /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ ++ && { echo i486-ncr-sysv4; exit; } ;; ++ NCR*:*:4.2:* | MPRAS*:*:4.2:*) ++ OS_REL='.3' ++ test -r /etc/.relid \ ++ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid` ++ /bin/uname -p 2>/dev/null | grep 86 >/dev/null \ ++ && { echo i486-ncr-sysv4.3${OS_REL}; exit; } ++ /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \ ++ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ++ /bin/uname -p 2>/dev/null | /bin/grep pteron >/dev/null \ ++ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ;; + m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*) + echo m68k-unknown-lynxos${UNAME_RELEASE} + exit ;; +@@ -1153,7 +1137,7 @@ EOF + rs6000:LynxOS:2.*:*) + echo rs6000-unknown-lynxos${UNAME_RELEASE} + exit ;; +- PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.0*:*) ++ PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.[02]*:*) + echo powerpc-unknown-lynxos${UNAME_RELEASE} + exit ;; + SM[BE]S:UNIX_SV:*:*) +@@ -1173,10 +1157,10 @@ EOF + echo ns32k-sni-sysv + fi + exit ;; +- PENTIUM:*:4.0*:*) # Unisys `ClearPath HMP IX 4000' SVR4/MP effort +- # says +- echo i586-unisys-sysv4 +- exit ;; ++ PENTIUM:*:4.0*:*) # Unisys `ClearPath HMP IX 4000' SVR4/MP effort ++ # says ++ echo i586-unisys-sysv4 ++ exit ;; + *:UNIX_System_V:4*:FTX*) + # From Gerald Hewes . + # How about differentiating between stratus architectures? -djm +@@ -1202,11 +1186,11 @@ EOF + exit ;; + R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*) + if [ -d /usr/nec ]; then +- echo mips-nec-sysv${UNAME_RELEASE} ++ echo mips-nec-sysv${UNAME_RELEASE} + else +- echo mips-unknown-sysv${UNAME_RELEASE} ++ echo mips-unknown-sysv${UNAME_RELEASE} + fi +- exit ;; ++ exit ;; + BeBox:BeOS:*:*) # BeOS running on hardware made by Be, PPC only. + echo powerpc-be-beos + exit ;; +@@ -1216,6 +1200,12 @@ EOF + BePC:BeOS:*:*) # BeOS running on Intel PC compatible. + echo i586-pc-beos + exit ;; ++ BePC:Haiku:*:*) # Haiku running on Intel PC compatible. ++ echo i586-pc-haiku ++ exit ;; ++ x86_64:Haiku:*:*) ++ echo x86_64-unknown-haiku ++ exit ;; + SX-4:SUPER-UX:*:*) + echo sx4-nec-superux${UNAME_RELEASE} + exit ;; +@@ -1243,6 +1233,16 @@ EOF + *:Darwin:*:*) + UNAME_PROCESSOR=`uname -p` || UNAME_PROCESSOR=unknown + case $UNAME_PROCESSOR in ++ i386) ++ eval $set_cc_for_build ++ if [ "$CC_FOR_BUILD" != 'no_compiler_found' ]; then ++ if (echo '#ifdef __LP64__'; echo IS_64BIT_ARCH; echo '#endif') | \ ++ (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | \ ++ grep IS_64BIT_ARCH >/dev/null ++ then ++ UNAME_PROCESSOR="x86_64" ++ fi ++ fi ;; + unknown) UNAME_PROCESSOR=powerpc ;; + esac + echo ${UNAME_PROCESSOR}-apple-darwin${UNAME_RELEASE} +@@ -1258,7 +1258,10 @@ EOF + *:QNX:*:4*) + echo i386-pc-qnx + exit ;; +- NSE-?:NONSTOP_KERNEL:*:*) ++ NEO-?:NONSTOP_KERNEL:*:*) ++ echo neo-tandem-nsk${UNAME_RELEASE} ++ exit ;; ++ NSE-*:NONSTOP_KERNEL:*:*) + echo nse-tandem-nsk${UNAME_RELEASE} + exit ;; + NSR-?:NONSTOP_KERNEL:*:*) +@@ -1303,13 +1306,13 @@ EOF + echo pdp10-unknown-its + exit ;; + SEI:*:*:SEIUX) +- echo mips-sei-seiux${UNAME_RELEASE} ++ echo mips-sei-seiux${UNAME_RELEASE} + exit ;; + *:DragonFly:*:*) + echo ${UNAME_MACHINE}-unknown-dragonfly`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` + exit ;; + *:*VMS:*:*) +- UNAME_MACHINE=`(uname -p) 2>/dev/null` ++ UNAME_MACHINE=`(uname -p) 2>/dev/null` + case "${UNAME_MACHINE}" in + A*) echo alpha-dec-vms ; exit ;; + I*) echo ia64-dec-vms ; exit ;; +@@ -1324,11 +1327,14 @@ EOF + i*86:rdos:*:*) + echo ${UNAME_MACHINE}-pc-rdos + exit ;; ++ i*86:AROS:*:*) ++ echo ${UNAME_MACHINE}-pc-aros ++ exit ;; ++ x86_64:VMkernel:*:*) ++ echo ${UNAME_MACHINE}-unknown-esx ++ exit ;; + esac + +-#echo '(No uname command or uname output not recognized.)' 1>&2 +-#echo "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" 1>&2 +- + eval $set_cc_for_build + cat >$dummy.c < + printf ("m68k-sony-newsos%s\n", + #ifdef NEWSOS4 +- "4" ++ "4" + #else +- "" ++ "" + #endif +- ); exit (0); ++ ); exit (0); + #endif + #endif + +diff -up hdf5-1.8.12/bin/config.sub.aarch64 hdf5-1.8.12/bin/config.sub +--- hdf5-1.8.12/bin/config.sub.aarch64 2013-11-21 08:14:01.000000000 -0700 ++++ hdf5-1.8.12/bin/config.sub 2014-01-08 19:55:58.087311149 -0700 +@@ -1,10 +1,10 @@ + #! /bin/sh + # Configuration validation subroutine script. + # Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, +-# 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 +-# Free Software Foundation, Inc. ++# 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, ++# 2011, 2012 Free Software Foundation, Inc. + +-timestamp='2008-01-16' ++timestamp='2012-10-10' + + # This file is (in principle) common to ALL GNU software. + # The presence of a machine in this file suggests that SOME GNU software +@@ -21,9 +21,7 @@ timestamp='2008-01-16' + # GNU General Public License for more details. + # + # You should have received a copy of the GNU General Public License +-# along with this program; if not, write to the Free Software +-# Foundation, Inc., 51 Franklin Street - Fifth Floor, Boston, MA +-# 02110-1301, USA. ++# along with this program; if not, see . + # + # As a special exception to the GNU General Public License, if you + # distribute this file as part of a program that contains a +@@ -32,13 +30,16 @@ timestamp='2008-01-16' + + + # Please send patches to . Submit a context +-# diff and a properly formatted ChangeLog entry. ++# diff and a properly formatted GNU ChangeLog entry. + # + # Configuration subroutine to validate and canonicalize a configuration type. + # Supply the specified configuration type as an argument. + # If it is invalid, we print an error message on stderr and exit with code 1. + # Otherwise, we print the canonical config type on stdout and succeed. + ++# You can get the latest version of this script from: ++# http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD ++ + # This file is supposed to be the same for all GNU packages + # and recognize all the CPU types, system types and aliases + # that are meaningful with *any* GNU software. +@@ -72,8 +73,9 @@ Report bugs and patches to 1.8.12-2 +- Update debian source +- Add patch for aarch64 support (bug #925545) + * Fri Dec 27 2013 Orion Poplawski 1.8.12-1 - Update to 1.8.12 diff --git a/sources b/sources index 35b55dd..c32b61f 100644 --- a/sources +++ b/sources @@ -1,2 +1,3 @@ 03ad766d225f5e872eb3e5ce95524a08 hdf5-1.8.12.tar.bz2 28adeabb6b0179e62d82110450935487 hdf5_1.8.12-1.debian.tar.gz +918828a109a7c4ee0639a7515fcfb1e0 hdf5_1.8.12-4.debian.tar.gz